Marinomonas profundi: J8N69_13015
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Entry
J8N69_13015 CDS
T07858
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mprf
Marinomonas profundi
Pathway
mprf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mprf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J8N69_13015 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mprf03400
]
J8N69_13015 (mfd)
Enzymes [BR:
mprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J8N69_13015 (mfd)
DNA repair and recombination proteins [BR:
mprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J8N69_13015 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UDV02501
LinkDB
All DBs
Position
complement(2792360..2795773)
Genome browser
AA seq
1137 aa
AA seq
DB search
MSQTVSLTIKPGFKNVINGLDGSRKALQLLAIASHHKQPILFMANTVAELNELEDEIQFL
NQNKRELLRFSDWETLPYDAFSPHQDIVSQRLETLAKLSETQTPIVLSTVASCLTRLCPK
QHLDAQRFHLQEGQELPLEQLSRKLSNAGYLNVDNVHEHGEYAIRGALMDVYPMGADNPI
RIDWFDNEIESIRWFDPETQRSISKVSEIKMLPAKEFPTTTQGIQQFRQAFRERFDTAPL
SSPIYQDISSGLIPAGIEYYLPLFFTQTTSVFDYLPDNTLVIRSDTFNEQFASIQLDFRS
RHESLNYNIERPILKPDEICLREDELFAQLNQFTNIIFSATGEHPTYRAPALVKIDSKAA
QPLNKLHDFLQETTARVLIVAESAGRREALLELLKKHNIKPKQVDNWEAFSKSTKTLAIT
EGNIGRGFIIADELVLIAESEILGERVAQHRRRNKQNNISEDAIIRNLTELRLNAPVVHI
DYGVGRYLGLTNLEIDGQETELLTLGYANDAKLYVPVSSLQLISRYTGADEDTAPLHKLG
TDKWSVAKQKAAEKARDTAAELLEIYAKREARVGHAFAKPDDQYELFSAGFPFEETPDQQ
MAIDAVMGDMSAKKPMDRLVCGDVGFGKTEVAMRAAFLAVQDGKQVAVLVPTTLLAQQHY
ENFCDRFADWPVEVELLSRFRSGKQSNSSIDRLESGKADIVVGTHKLIQSNIKFANLGLV
IIDEEHRFGVKQKEQFKALRSEVDILTLTATPIPRTLNMSLSGIRDLSIIATPPAKRLSV
KTFIKQKDEHQIKEAILRELHRGGQVYYLHNEVQTIQKAAEELEALIPEARAIVGHGQMR
ERELEQVMSDFYHKRANVLVCSTIIETGIDIPNANTIIIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPNDRKVTGDAEKRLEAIMLADKLGAGFTLATHDLEIRGTGELLGDGQSGH
IEHVGFSLFMDMLDRAVKSLKNGESPDIDITSPAQTEVNLRVPALIPEDYLGDVHSRLIL
YKRIASATTTEDLKDLQVEMIDRFGLLPDATKNLFRQTELKLKAESLGIHKIEANAKEGK
IFFNSKTPVDPMKLIRLIQTKPDVYKLAGSDTLKFLAQMNSAEERFQHTTKTLELLH
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaaccgtatcccttaccataaaaccaggcttcaagaatgtgatcaatggccta
gatggaagccgcaaagccctgcagctgcttgccatcgcatcacatcataagcagcctatt
ttattcatggccaacacagtcgcagagctcaatgaactggaagacgaaattcaatttctc
aaccaaaacaaaagagaactgctcaggtttagtgattgggaaaccctaccctacgatgcg
ttttcaccccaccaagacatcgtatcgcaacgcctagaaacgctcgcaaaactaagcgaa
acgcaaacccccattgtactcagcaccgttgcctcttgcttaacgcgcctctgcccgaaa
caacacctagacgcacagcgctttcacctgcaagaaggacaagaacttccgcttgagcaa
ctctcgagaaaactcagcaatgctggctatttaaacgtcgacaacgtccatgaacacggc
gaatacgccattcgtggcgccttgatggacgtctacccgatgggcgccgacaacccaatc
agaatcgattggtttgacaacgaaattgaatccattcgttggtttgatccagaaacccag
cgcagcattagcaaagtcagcgaaataaaaatgctccccgcgaaagagttccccaccacg
acacagggaattcagcagtttcgccaggcatttagagagcgttttgataccgcgccactg
tctagcccaatctatcaagatatctccagcgggctcattcccgctggcatcgaatattac
ttaccgttatttttcacccaaaccaccagtgtgtttgactatttgcccgacaacacccta
gtgattcgctccgatacttttaatgagcaatttgccagcatccaactcgattttcgcagc
cgtcacgagtcgctcaactacaatattgagcgccccatcttaaagcccgatgaaatatgc
ctaagagaagacgagctttttgcccaactcaaccaattcaccaacattattttttccgcc
acaggtgagcaccctacttatcgcgcgccagcgctggtaaaaatcgactctaaagcggcg
caaccgctcaataaattacacgactttttacaggaaaccaccgctcgagtgctcattgtt
gccgagtccgcaggccgtcgtgaggcgctgcttgagctgctcaaaaagcacaacatcaaa
cccaaacaagtcgacaactgggaagccttcagcaaatccaccaagacactcgccatcacc
gaaggcaatattggccgcggttttatcattgccgatgagctcgtactcatagcggaaagt
gaaatactaggcgagcgtgttgcccagcaccgtagacgcaacaaacaaaacaatatcagt
gaagacgcgatcattcgcaacctcaccgagctaagactaaatgcgccagtcgtgcacata
gactatggggttggccgctacctcgggctgaccaacttggaaatcgacgggcaagaaaca
gaactgctgacgcttggctatgccaatgacgccaaactctacgtccccgtctcttcatta
caattaatctcgcgctacacaggcgccgatgaagacaccgcaccactgcacaaattgggc
accgacaagtggagcgtcgcgaagcaaaaagccgccgaaaaagcccgtgacaccgccgcc
gagctactggaaatctacgccaaacgcgaggcccgagtcggccacgcatttgccaaaccc
gacgaccaatacgaattgttttcagcgggttttccgtttgaagaaaccccagaccagcaa
atggccatcgacgcggttatgggcgacatgtcagccaaaaagcccatggatcgcctcgtc
tgtggcgatgtaggctttggtaaaacagaagttgccatgcgagcggcctttctggcggtt
caagatggcaaacaagtcgcggtgcttgtgcccaccacgctgctcgcccaacaacactat
gagaatttttgtgatcgctttgctgactggccagtcgaagtcgaattactgtctcgcttt
cgctctggaaagcagtccaacagctcaatagatcgtctcgaatcaggcaaagcagacata
gtggtcggcacccataaattgatccaaagtaacatcaaatttgccaatctaggcttggtg
attattgacgaagaacaccgctttggcgtcaaacaaaaagagcaattcaaagccttgcgg
tcggaagtcgacatactcacgctgacggcaacgccaatcccaagaaccctcaatatgtcg
ctgtctggcattcgagatttgtccatcattgccacaccgccagctaagcgtctgtccgtc
aaaacctttatcaaacaaaaagacgagcatcaaataaaagaagccatcttgcgagaactg
catcgtggtggacaagtgtattacctacacaatgaagtacaaaccatccaaaaagccgcc
gaagaactggaagccttgattcccgaagcgcgggctattgttggtcatggccaaatgcgt
gaacgagagctcgaacaagtcatgtccgatttctatcacaaacgcgccaacgtattggtc
tgctctaccatcatagaaaccggtatcgacattcccaacgcgaacaccatcattattgaa
cgagccgacaagtttggcttggcccaacttcatcaactacgaggtcgggtaggtcgatca
catcaccaagcatacgcctacttgctcacgccaaatgatcgcaaagtgaccggcgacgct
gaaaaacgcctagaagccattatgcttgccgacaagctaggcgccggctttacgctagcc
actcacgatttggaaattcgtggcacaggagaactattgggtgatggtcaaagcggccat
attgagcacgttggtttctccctctttatggacatgctggatcgcgcggtcaaatcctta
aaaaatggcgaatcgcccgatattgacataacatcgcccgcccaaactgaagtcaattta
cgcgtaccagccctcattccagaagactatcttggcgatgtgcactcccgactgattctc
tacaaacgcattgccagtgccaccaccacagaagacctaaaagacttacaagtggaaatg
attgaccgtttcgggctgttacctgacgcgaccaaaaacctgttccgccaaacagaatta
aagctaaaagcagaaagtctcggcattcataaaattgaagcaaacgccaaagaaggtaag
attttcttcaatagcaaaaccccagtcgatccgatgaaactcattcgactcattcaaacc
aaaccagatgtttacaagctagctggctctgataccttaaagttcttagcccaaatgaac
agcgcagaagagcgcttccaacacaccacaaaaaccttggaattattacattga
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