Moorena producens: BJP34_18175
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Entry
BJP34_18175 CDS
T04499
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpro
Moorena producens
Pathway
mpro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJP34_18175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpro03400
]
BJP34_18175
Enzymes [BR:
mpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJP34_18175
DNA repair and recombination proteins [BR:
mpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BJP34_18175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AOX01113
UniProt:
A0A1D8TU88
LinkDB
All DBs
Position
4941368..4944967
Genome browser
AA seq
1199 aa
AA seq
DB search
MALSSIIRTLEHSPLTSELLTKLNRQQSLYLNGIPRLPKGLVASALAKADQRLLFVVCST
LEEASRWATQLEAMGWSTVHLYPTSEASPYEPFDPESEMTWGQMQVLADLLERLKVDRLP
VESSDLQPSLVQPSTDGMAIVATQAALQPHLPPVDAFKPYCLTLNQGMTWDGKNLDQKLA
QLGYERVPLVETEGQWSRRGDIVDVFPVALELPVRLEWFGDELEQLREFDPATQRSLDKI
DGIVLTPTDFGHIISQVLRSSKVELIQSYLSPQEQESFEAGQSLEGSRRFLGIAFDQPAS
LVDYLPENTLIVIDEPEQCAAHCDRWVEHAEEQLEELNHSLPSLHRYFDHALELKVNQFQ
VVREQPSTPAATPILYLSELVEETTQNAVNLASRSVPVTPHQFAKLAEVLREQSNRRFSI
WLVSAQPSRSVALLQEHDCPAQFVPNPRDYPAIEKLNIQRTAVAVKYSGLAELEGFILPT
YRIVVVTDREFFGQHTLATPSYIRKRRRAASQQVDPNKLRPGDYVVHKNHGIGQFLKLEK
LSINNETREYLVIKYADGLLRVAADQLGVLSRFRHTGTGLPQLHKMSGKTWEKTKNRVRK
SIKKVAVDLLKLYAQRAQQSGYCFPPDSPWQQELEDSFPYQPTPDQLKAIQDVKRDLESD
RPMDRLVCGDVGFGKTEVAIRAIFKAVTSNKQVAFLAPTTILTQQHYHTIKERFSPYPIN
VGLLNRFRTPQERRDILQRLKTGELDVVVGTHQLLGKSVTFRELGLLVIDEEQRFGVNQK
EKIKSFKTQVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLSPYKPEAVR
TAIRMELDRGGQVFYVVPRVEGIEEVAAELREMILEARIAIAHGQLDPAELESIMLTFSN
GEADILVCTTIIESGLDIPRVNTILIEDAHKFGLSQLYQLRGRVGRAGIQAHAWLLYPNQ
KVLSEAAKKRLRAIQEFTQLGSGYLLATRDMEIRGVGNLLGVEQSGQMEAIGFDLYMEML
QEAIREIQGQEIPQVDDTQIDIQITAFIPADYIPDLDQKISAYRAVAAAGSEKELAQIAA
AWSDRYGPIPSVAEQLLRVMELKQLGKSLGFARIRPEGKQHIVLETPMEEPAWKLLQENL
PQHLRSRFVYSPGKVTVRGLGLVKTNKQLESLIEWLGKMQGALPEPTVVGLPQSPIPNA
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggcactttcctcgatcattcggacactagagcactcccctctcaccagtgaactactc
accaaactaaatcggcaacagtctctatatctgaatggtattccccgtttgccaaagggc
ttagtagcatcagccctggccaaggcagaccaacgcctcctattcgtagtctgtagcacc
ctagaagaagcaagtcgctgggcaacccaactcgaagccatgggttggagtacagtccac
ctataccccacttcagaagcatccccctatgaaccctttgacccagagtcggaaatgacc
tggggacaaatgcaagtattggcagatttgctcgaaaggttgaaggttgacaggttgcca
gttgaaagttctgacttacaaccttcattggttcaaccttcaactgatgggatggctatt
gtggccactcaagcagcactccaaccccacttgccccctgtcgatgcctttaagccctac
tgccttacccttaaccagggcatgacttgggatgggaaaaaccttgatcaaaagttggca
cagctgggttatgaacgggttcccctagtagaaacagaaggtcagtggagtcggcgcggt
gatattgtagatgttttcccggtagccttagaattgccagtgcggctggaatggttcgga
gatgagttagagcagttgcgggagtttgacccggcaacccagcgttccctggataaaatt
gacggcatcgtgctgacccccacggattttggtcacattattagccaagttctgagaagc
tcaaaggtagaactaatccaatcttatctctcacctcaggagcaagaatcttttgaggca
ggtcagtctttagagggtagccgccgtttcttgggtattgcctttgaccagccagcctct
ctagtggattacctgccagaaaataccttaattgtcattgatgaaccagaacagtgtgct
gcccattgcgatcgctgggtggaacatgccgaagaacaattagaggaactgaatcattcc
ctgccctctctccatcgttattttgatcatgctctagagttgaaggttaaccagttccag
gttgttcgcgaacaaccttcaactcctgctgcgactccaatcctgtatttatcagaattg
gtagaagaaactacccaaaatgctgttaatctggctagccgctctgtaccagtaacaccc
caccagtttgccaaactagcagaagtactgcgagagcagagcaatcgccgtttctcgatt
tggctggtttctgcccaacctagtcgttctgttgccctgctccaagaacatgattgtcct
gcccagtttgtccccaaccctcgagattacccagctattgagaaattaaatatccagagg
acagcggtagcggtcaagtattcgggcttagcagaactagagggatttatcctccctact
taccggatcgtggttgtgactgaccgggaattctttgggcagcatactttggcaactccc
agttatatccgtaagcgccgccgtgctgcctcccaacaggttgaccccaataagctacgt
ccaggggattatgtagttcacaagaatcatgggatcggtcagttcctcaagctggaaaaa
ttaagcataaataatgaaactcgcgagtatttggtgatcaagtacgctgatggtttgctc
cgggtggcagcggatcagttgggggtactatctcggtttcgacatacaggtaccggtttg
cctcaactccacaagatgtctggtaaaacctgggagaaaaccaaaaatcgtgtccgtaaa
agtattaagaaagtagcggtggatttgctgaagctctatgcgcagcgagcacagcagtct
ggttattgctttccaccggattccccttggcagcaggaattagaagattctttcccctac
caacctactcctgaccaactcaaggcgatacaggatgtgaagcgggatttagagagcgat
cgccctatggatcgcttagtttgtggggatgtggggtttggtaaaacagaagttgcaatt
cgggctatttttaaagctgtcacttctaacaagcaagtagctttccttgccccgaccact
atcctgactcagcagcattatcataccatcaaagaacggttttctccctaccccatcaat
gtcggtctactcaaccgctttcgtaccccccaggaaaggcgtgatattctccaacgtctt
aaaactggggagttagatgtggtggtaggtacccatcagttgctggggaagagtgtaact
tttcgagagttagggctgctggtgatagatgaagaacagcggtttggtgttaaccaaaag
gaaaaaattaaatctttcaaaactcaggtagatgtattgaccctcagcgctactcccatt
ccccgtaccctctatatgtccttatcgggggtacgagaaatgagtttgattactacacca
ccccccttacggcgtcccattaaaacccacttatcgccctataaaccagaagctgtccgc
accgccattcgtatggaacttgaccgaggtggtcaggtattctatgtcgtacctcgggtt
gaagggattgaagaagttgctgcggaactcagggaaatgatccttgaggccagaatcgcc
attgctcacggtcagctcgacccagcggaattagaatcaattatgctcacctttagcaac
ggtgaagcagatatcctagtgtgtactacgattattgaatctgggctagatattcctaga
gtcaacaccattttgatcgaagatgctcacaaatttggtctttcccaactctaccaattg
cgaggacgagtaggtcgggctgggattcaagcccacgcttggttactttatcccaaccag
aaggtactctcagaagcagccaaaaaacgcttacgagcaattcaggagttcactcaactc
gggtcaggttatctgttagcaaccagggatatggaaattcgaggggtggggaatctccta
ggtgtagaacaatccggtcagatggaagccattggctttgacctctacatggaaatgctg
caagaagcgattagggaaattcaagggcaagaaattccccaagtagatgatacccagatt
gacattcagatcacagcctttattcccgctgactatattccagatttagatcaaaaaatt
agtgcttatcgagcagtagctgcagcagggtccgagaaagagttagcacagatcgcagca
gcttggagcgatcgctatggtccaattccctccgtggcagagcaattactgcgggtgatg
gaactaaaacagttagggaagtctttgggatttgcccgaattcgaccagagggtaaacaa
cacattgtcctagaaacacccatggaagaaccagcctggaagttactccaagagaacctc
ccccaacatttgcgatcgcgttttgtctattctcctggtaaagttacggttcgtggttta
ggtctggtcaagaccaacaaacagctagagagcctgattgagtggttaggcaagatgcaa
ggcgcactgccagaacctactgtggttgggttaccccaatccccaatccccaatgcctaa
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