Microbacterium protaetiae: ET475_13455
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Entry
ET475_13455 CDS
T06575
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mprt
Microbacterium protaetiae
Pathway
mprt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mprt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ET475_13455 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mprt03400
]
ET475_13455 (mfd)
Enzymes [BR:
mprt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ET475_13455 (mfd)
DNA repair and recombination proteins [BR:
mprt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ET475_13455 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QAY60894
UniProt:
A0A4P6EF68
LinkDB
All DBs
Position
2911243..2914869
Genome browser
AA seq
1208 aa
AA seq
DB search
MTVPGIARALAQADTVRDALAAASVDGDFSLVEGMNAPVLAALVERRREGGHPAALLVIT
PTSRRAESVGPALEELLPGATVLHFPAWETLPHERLSPSAETVGRRLDALRRAREWAAAG
DDRGPLIVTASVRAALQPLAGGLDEAVPIVLAAGSRGHDLSAVSAQLVERAYLRVDMVSR
RGEFAVRGGILDVFPPTADHPFRVEFFGDEVDQIRAFSVADQRSLPGDIAQVDLLPSREL
LLTDTVRERARELAERAPALRGMLEKMAEGIPAEGMESLTPALADHLVALVDYLPTQTAV
ALLDPERAVTRALTLAETNREFLEAAWSAATAGGQSPVDLGSGDFLTLPELHERTRDRHG
VWWTFSAFDSGAADAAAEGLAVADAGDLGAVRVDGQAVPSFQGNIDGATGHIAQLLGDGY
RVVVAASGAGLADRARDVLGERGIAARRVDEVFEPPEPGVVHVVVATLERGFEASSAKLA
VLTENEFYGRTVAADSRVVRKLASRRRNVVDPLQLKPGEAVVHSTHGIGRFVELTQREVS
SGGRNPVKSTREYLVLEYAPSKRGYPGDKLYVPTDQLDLLSRYVGGEAPTLSKMGGSDWA
QAKGKARRAVRDIAVELVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETPDQLQTIDE
IKADMEKPVPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFAE
RYAGFPVKVRPLSRFQTDKEARQTLAGLADGTVDMVIGTHRILTEKVMFKDLGLLIIDEE
QRFGVEHKDALKKLKVGVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILTYVG
PRNDKQVAAAIRREILREGQVFYVHNRVQSIQRVAAHLAELVPEARVAVAHGQMGEHQLE
AVVDDFWERRADVLVCTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRDRAY
AYFLYDEMKPLSETAADRLETIAVNNDLGSGTQVALKDLELRGAGNMLGAEQAGHIAGVG
FDLYLRMVGEAVASFRGEDTEGPTELRLELPVQARLPETYIDSERLRLEAYQKLSGAASV
TATDDAIDLVVDELRDRYGELPGEAEGLVAVARLRRRAAQSALADVVAMGPNLRIAPAQL
PDSMRVRLQRLYPKAKLVAGGDALVVPLPTAAGERMPDGDLIAWVGQLLDQLWPLPVAEA
AGAASAAS
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
gtgacagttcccgggatcgcgcgcgccctcgcgcaggccgataccgtgcgagacgcgttg
gcggcggcatccgtcgacggcgatttctcgctcgtcgagggcatgaatgcgcccgtgctc
gcggcgctggtcgaacggcgtcgtgaaggcggccaccccgccgctctgctggtgatcacc
cccacgagtcggcgcgcggagtcggtggggccggcgctggaagagctgctgccgggggcg
acggtcctgcattttcccgcgtgggagacgctgccgcacgaacggctcagtccgagcgcc
gagaccgtcgggcgacgactcgacgcgctgcgccgtgcccgcgagtgggcggcggccggc
gacgacaggggaccgctgatcgtcacggcttcggtacgtgcggccctgcagccgctggcc
ggcggcctcgatgaggcggtgccgatcgttctggcggccggttcgcgaggacacgacttg
tcggcggtgagcgctcagctggtcgagcgtgcctatcttcgcgtcgatatggtctcgcga
cgcggtgagttcgccgtgcgcggcggcattctcgacgtctttccgccgaccgccgatcat
cccttccgcgtcgagttcttcggcgacgaggtggatcagatccgcgcgttctcggtcgcc
gaccagcgcagtctgcccggcgacatcgcacaggtcgacctgctgcccagtcgtgagctg
ctgttgactgacaccgtgcgcgagcgtgcacgcgaactcgccgaacgagccccggcgttg
cgcggaatgctcgagaagatggccgagggtattccggccgaaggcatggaatcgctcacc
cccgcgctggccgatcatctggtcgcgttggtggactaccttccgactcagacggcggtg
gccctgctcgaccccgagcgggcagtcacccgcgcgctgaccctcgccgagaccaaccgc
gaatttctcgaggcggcgtggagcgctgccacggcaggtggacagagccccgtcgacctc
ggttcgggagactttctcacactgcccgagctgcacgagcgcacccgcgatcgccacggt
gtgtggtggacgttcagcgccttcgactcgggagcggcggatgccgcggccgagggattg
gcggtcgccgatgccggcgacctcggtgccgtgcgtgtcgacggccaggcggtgccgtcg
ttccagggcaacatcgacggagcaaccggtcacatcgcccagctgctcggcgacgggtac
cgcgtcgtggtcgccgcatcgggtgcggggctggccgatcgcgcgcgcgacgtgctgggc
gagcgcggaatcgccgcccgtcgtgtcgacgaggtgttcgagccccccgaacccggtgtg
gtgcacgtggtcgtcgccacgctcgagcgcgggttcgaggcatccagtgccaaactcgcg
gtgctgaccgagaacgagttctacgggcgcaccgtcgccgccgactcgcgggtcgtgcgc
aagctcgcctcgcggcggcgcaacgtcgtggatccgctgcagctgaagccgggcgaggcc
gtcgtgcactccacgcacgggatcggccggttcgtcgaactgacccagcgcgaggtctcc
agcggcggacgcaacccggtcaagagcacacgggagtacctcgtgctcgagtacgcgccg
agcaaacgcggctatcccggggacaagctctatgtacccaccgatcagctcgacctgctc
tcgcgctatgtcggcggcgaagcgcccactctctcgaagatgggcggcagcgactgggca
caggccaagggcaaggcgcgcagggccgtgcgcgacatcgctgtcgagctcgtgaaactg
tattcggcgcggatggcctcgaagggccatgcgttcgggcctgacacgccgtggcagcgg
gagctcgaagaggcgttcccgttcgccgagacgcctgaccagttgcagaccatcgatgag
atcaaggccgatatggaaaagcccgtgccgatggaccggctgctgtcgggcgacgtcggc
ttcggcaagaccgaggtggctgtgcgcgcggcgttcaaagcgattcaagacggcaagcag
gtcgcgatgctggtgcccaccacactgctggtcaagcagcacctcgagaccttcgccgag
cgctacgccggctttccggtgaaggtgcgcccgctgtcgcgctttcagaccgacaaagaa
gcgcgacagacgctggcgggcctggctgacggcaccgtcgacatggtcatcggcacgcac
cgcatcctcaccgagaaggtcatgttcaaagacctcggactgctcatcatcgacgaggag
cagcgtttcggtgtcgagcacaaagacgcgttgaagaagctcaaggtcggcgtcgacatc
ctcgccatgagcgcgaccccgattccccgcacactggagatggccgtcaccggcatccgc
gagatgtcgacgctgcagaccccgcccgaagaccggcacccgattctcacctatgtcggg
ccgcgcaacgacaagcaggtcgccgcggcgatccggcgcgaaatcctgcgcgagggacag
gtcttctatgtgcacaaccgtgtgcagtcgatccagcgggtggctgcgcacctggccgag
ttggtgcctgaggcgcgtgtcgccgtcgcgcatggccagatgggcgagcaccagctcgaa
gccgtggtcgacgacttctgggagcgccgcgccgatgtgctggtgtgcaccacgatcatc
gagaccgggctggacatctccaacgcgaacacgatcatcatcgatcgcgctgacaaatac
ggcctcagtcagctgcaccagctgcgcggacgggtggggcgcgggcgcgaccgcgcctat
gcgtatttcctctacgacgagatgaagccgctgtctgagacggccgccgaccggctcgag
accatcgccgtgaacaacgacctgggcagcggtacgcaggtggccttgaaagacctggag
ttgcgtggcgcaggcaacatgctcggcgccgaacaggcgggccacatcgccggcgtcggc
ttcgacctgtatctgcgcatggtcggcgaggcagtcgcatcattccgcggcgaagacacc
gaggggccgaccgagctgcggctcgaactgcccgtgcaggcgcgcttgcccgagacgtac
atcgacagcgagcggctgcggttggaggcctatcagaagctgtcgggcgccgcatcggtc
actgccacagacgatgccatcgacctcgtcgtcgacgagctgcgcgatcgctacggcgag
ttgcccggtgaggccgagggcctggtcgccgtcgcacgcctacggcgacgggccgcgcag
tcggcactggccgatgtcgtggcgatgggcccgaacctgcgcattgcgccggcgcagctg
cccgactcgatgcgcgtgcggctgcagcggctgtacccgaaggcgaagctcgtggccggg
ggagacgccctggtcgtgcccctgccgactgcggcgggcgagcggatgccggacggcgac
ctcatcgcctgggtcgggcagctgctcgaccagctgtggccgctgccggtcgccgaggcc
gcgggtgccgcatctgcggcatcctga
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