Microbacterium protaetiae: ET475_14420
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Entry
ET475_14420 CDS
T06575
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mprt
Microbacterium protaetiae
Pathway
mprt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mprt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ET475_14420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mprt03400
]
ET475_14420
Enzymes [BR:
mprt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ET475_14420
DNA repair and recombination proteins [BR:
mprt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ET475_14420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QAY61063
UniProt:
A0A4P6EHR5
LinkDB
All DBs
Position
complement(3119693..3122188)
Genome browser
AA seq
831 aa
AA seq
DB search
MGEERLVQIGGRRLRLSRLEKVLYPATGTTKGEVIDYYTRIAPLLLPHITGRPVTRKRWP
EGVDHPPFFAKNLESGAPEWVHRLPIEHSTGAKDYPLVDDVPTLVYLAQVASLELHVPQW
RFTPEGERARPDRLVLDLDPGPGVGLPECARVALWVREILSGMGLETFPVTSGSKGIHLY
AGLDGSQTSEQASALAKELARLLEADHPDLVVSRMAKNLRADKVLLDWSQNNGSKTTIAP
YSLRGRELPTVAAPRTWDELADPALTQLSFDEVLERAERIGDPMASLGFRAGGRAAASGP
LSAYIAKRDAARTPEPVPDNPLAAATPVGQPPRFVIQEHHARRLHWDLRLEHDGVFVSWA
VPRGVPPTAGRNSLAVMTEDHPLEYGSFEGTIPHGEYGGGTVTIWDDGRYDPEKWRDDEV
IFTAHGRPGGPLGTVRLALIRTQGSGERSSWLLHRTKTDAEGRVQPDGQPVMPTEQADEP
SAGGASRHRQTRDAAAATAPPATVPAPIGPAAVAPMLSTLARPAAARTAAGRWGAWAEMK
WDGIRAVGVWDGASLRLFARRGTDITARYPELTAVDAGLSDEPAVVDGEIIALDASGRPS
FPLLQRRMHLTAARQIEGERRRTPVRYHLFDVLAVSGTDLAGRALRERREVLESIAAHTI
DEIVVPPVFDDVDEALATAARLQLEGIVVKDPASPYRRGVRSDQWLKVKLTRTQEVVIGG
IRPGRGGRTGSIGSLLLGIPDENGLHYAGRVGSGFSESTLSRLMSVLEPLRCDSDPFVGV
PAADARDAEWVRPELVGEVEFAEFTPGGILRQARWRGLRPDKTPAEVRRES
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaggaacggctggtgcagatcgggggcagacgtctgcgtctgagccgcctcgag
aaggtgctctaccccgccaccggcaccaccaagggcgaggtcatcgattactacacccgc
atcgccccgctgctgctgccgcacatcaccggccgtccggtgacgcgcaagcggtggccc
gagggcgtcgatcacccgccgttcttcgcgaagaatctcgagtcgggcgcaccggagtgg
gtgcaccgactgccgatcgagcattccaccggggccaaggactaccccctcgtggacgac
gtgcccactctcgtctatctcgcgcaggtggccagcctcgagctgcacgtgccgcagtgg
cggttcacgcccgagggcgagcgagcccgccccgaccggctcgtgctcgacctcgacccc
ggtccgggcgtcgggttgcccgagtgcgcgcgcgttgccctctgggtacgcgagatcctg
tctgggatgggtctggagacgttcccggtcaccagtggcagcaagggcatccacctctac
gcggggctggacggatcgcagacgagcgagcaggcctccgcgctggccaaagagctcgcc
cgcctgttggaggccgaccaccccgacctcgtggtcagtcgcatggccaagaacctgcgg
gccgacaaggtgctgctggattggagccagaacaacggcagcaagacgacgatagcgccg
tactcactgcgcggccgcgaactgcccaccgtcgccgcaccccgcacctgggacgaactg
gccgaccccgccctgacacagctgagcttcgacgaggtgctcgaacgggccgaacgcatc
ggcgacccgatggcgagcctgggatttcgcgccggcgggcgggctgcggcatccggccca
ctgtcggcctacatcgccaagcgcgacgcggcgcgcacgcccgagccggtgcccgacaat
ccgctcgccgccgcgacgcccgtcggccagccgccgcgattcgtgatccaggaacaccat
gcgcgtcggctgcactgggatctgcgtctggagcacgacggggtcttcgtcagctgggct
gtgccccgcggagtaccgcccaccgccggccggaacagcctggccgtgatgaccgaggat
caccccctggagtacggctcgttcgaaggcacgattccacacggcgagtacggcggcggc
accgtcacgatctgggacgacggccggtacgaccccgagaaatggcgcgacgacgaggtc
atcttcacagcgcacgggcgtccgggcggcccgctgggcaccgttcgtctggccctcatc
cgcacccaggggtcgggcgagcgctcgagttggctgctgcatcgcaccaagaccgacgcc
gaaggccgcgtgcagcccgacgggcaacccgtgatgccgaccgaacaggccgacgagccg
tcggcgggcggtgcgtcccggcaccggcagacgcgggatgccgcagccgcgacggccccg
ccggcaaccgtgcccgccccaatcggaccggcagccgtcgcgccgatgctctccacgctc
gcacgaccggccgccgccagaacagccgccgggcggtggggcgcgtgggcggagatgaag
tgggatggcatccgggccgtgggtgtgtgggatggcgcctcactgcggttgttcgcacgc
cgtggcaccgacatcacggcgcgctaccccgagctgacggccgtcgatgccgggctctcg
gacgaacccgccgtcgtcgacggcgagatcatcgcactcgacgcgtcgggccggccgagc
ttcccgctgctgcagcgacgcatgcacttgaccgcggcccgccagatcgagggagaacgt
cgccgcaccccggtgcgttatcacctcttcgacgtgctggctgtctcgggcacggacctc
gccggccgtgcgctgcgtgagcggcgcgaggtgctcgagagcatcgccgcacacaccatc
gacgagatcgtcgtgccacccgtgttcgacgacgtcgatgaagcattggccaccgcggcg
cgcctgcagctggagggcatcgtcgtgaaagaccccgcctcgccctatcgtcgcggcgtg
cgctccgaccagtggctgaaggtcaagctcacccgcacccaggaggtcgtgatcggcggc
atccgtcccgggcgcgggggccgcaccggcagcatcgggtcgctgctgctgggcatcccc
gacgagaacggcctgcactatgccgggcgcgtgggcagcggcttcagcgaatcgacgctg
tctcgcctgatgagcgtgctggagccgcttcgctgcgacagcgacccgttcgtcggtgtt
cccgccgccgacgcccgcgacgccgaatgggtgcgtcccgagctggtcggagaagtcgag
ttcgccgagttcactcccggcggcatcctgcgccaagcgcgctggcgggggctgcggccc
gacaagacgccggcggaggtgcgccgcgagtcctaa
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