Mycolicibacterium psychrotolerans: MPSYJ_19480
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Entry
MPSYJ_19480 CDS
T07008
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpsc
Mycolicibacterium psychrotolerans
Pathway
mpsc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mpsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MPSYJ_19480 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpsc03400
]
MPSYJ_19480 (ligD_2)
Enzymes [BR:
mpsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MPSYJ_19480 (ligD_2)
DNA repair and recombination proteins [BR:
mpsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MPSYJ_19480 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
DUF6052
Motif
Other DBs
NCBI-ProteinID:
BBX68487
UniProt:
A0A7I7M9E5
LinkDB
All DBs
Position
1965159..1967423
Genome browser
AA seq
754 aa
AA seq
DB search
MVDCVGRVKLTNPDKVLYPATGTTKAEIFDYYVEVAAAMLPHIAERAVTRKRWPNGVAEG
SFFEKQLASSAPEWLDRGTIAHKSGTTTYPVIDTVEGLAWIAQQAALEVHVPQWRFVDQK
VGPATRIVFDLDPGEGVSMRQLCQVAHEVRDLIADIGLQTFPLTSGSKGLHLYVPLDDPI
SSRGASVLAKRVAVQLEQTMPTKVTATMTKSLREGKVFLDWSQNNGNKTTIAPYSLRGRE
HPTVAAPRTWDEITDPDLRHLTFDEVLDRLDRDGDLLADLDPALPAPDRLTTYRGMRDTA
KTPEPVPADAPRVGNNDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPDTPSENHLA
VHTEDHPMEYLTFAGEIPKGEYGGGEVYIWDTGTYETEKFNDNPPDGPGRGGEVIVTLHG
DKIEGRYALIQTDGKNWLAHRMKDQKRAAFAELLPMLTTEGSVERLTEKQWAFEGKWDGY
RVLVEADHGTLAVRSRRGRDVTGEYPQFQALAADLAEHHVILDGEAVALDESGVPSFREM
QNRKRSTRVEFWAFDIVFLDGRSLMRAKYSDRRRLLEALADQGGIIVPPQIDGDGPDALA
YAEEQRWEGVVAKKRDSTYQPGRRSAAWIKDKLWNTQEVVIGGWREGNGGRTSGLGALLL
GIPTEDGLQFVGRVGTGFTEKELAALRTTLAPLHTDESPFATELPRPDAKGVTFVRPELV
GEVRYSERTGDDRLRQASWRGLRPDKTPDEVVWE
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
gtggtggattgtgtgggccgggtgaagctgaccaacccggacaaggtgctgtacccggcg
acgggcaccaccaaggcggagatcttcgactactacgtcgaggtggcagccgcgatgctg
ccgcacattgccgagcgcgcggtgacgcgtaaacgctggcccaacggcgtggccgagggc
tccttcttcgagaaacagctggcctcgtcggcgccggagtggctggaccgcggcacgatc
gcgcacaagtcgggcaccaccacctatccggtcatcgacacggtcgaagggctggcctgg
atcgcgcagcaggccgcgctcgaagtgcatgtaccgcaatggcggttcgtggaccagaag
gtggggccggcgacgcgcatcgtgttcgatctcgaccccggcgagggggtgtcgatgcgg
cagctgtgccaggtggcccacgaagtgcgcgatctgatcgccgacatcggcctgcagacg
ttcccgctgacgagcggtagcaaggggctgcatctgtatgtgccgctcgatgacccgatc
agttcgcggggtgcgtccgtgctcgccaaacgtgtggccgtgcaactcgagcagacgatg
cccacgaaggtcaccgcgacgatgaccaagagtctgcgcgaggggaaggtcttcctcgac
tggagccagaacaacgggaacaagacgaccatcgcgccgtattcgcttcgggggcgggaa
catccgaccgtggcggcgccgcggacctgggacgagatcaccgatcccgacctgcgccac
ctgaccttcgacgaggtgctcgaccggctggaccgtgacggggacctgctggccgacctc
gatccggcgctgcccgcccccgaccggctcaccacctaccgcgggatgcgcgacaccgcg
aagaccccggagcccgtgcctgccgacgccccgcgggtagggaacaatgacaagttcgtc
atccaggaacaccatgcgcgccggctgcactacgacttccggctggaacgcgacggtgtc
ctggtcagctgggcggtgccgaagaacctgcccgacaccccctcggagaaccacctcgcc
gtgcacaccgaggaccatccgatggagtatctgacgttcgccggcgagatcccgaagggc
gagtacggcggcggcgaggtctacatctgggacaccggcacctacgagaccgagaagttc
aacgacaacccgcccgacggtcccggccgcggcggcgaggtgatcgtcacgctgcacggc
gacaagatcgagggccgctacgcgctgatccagaccgacggcaagaactggctggcgcac
cggatgaaggaccagaagcgcgccgcgttcgccgaactgctcccgatgctgaccaccgag
ggatcggtcgagcgactcaccgagaagcagtgggcgttcgagggcaagtgggacggatac
cgggttctggtcgaggcggaccacggcacactggccgtgcggtcccgccggggccgcgac
gtgaccggcgagtatccccaattccaagcgctggcagccgatctggccgagcatcacgtc
atcctcgacggggaggcggtggctctggacgagtccggagtgcccagttttcgcgagatg
cagaaccgcaagcggtccacgcgggtcgagttctgggccttcgacatcgtcttcctcgac
ggccgatcgctgatgcgggccaagtactccgaccgcaggcggctgctcgaggcgctcgcc
gaccagggcgggatcatcgtgcccccgcagatcgacggtgacggccccgacgcgctggcc
tacgccgaggagcagcgctgggaaggggtggtcgccaagaagcgggattccacctaccag
ccggggcgccggtccgccgcatggatcaaggacaagctgtggaacacccaggaggtggtc
atcggaggctggcgtgagggcaacggcgggcgcaccagcggactgggcgccctgctgctc
ggcatcccgaccgaggatggtctgcagttcgtcggccgggtcggcaccggtttcaccgag
aaggagctggctgcgctgcgcacaacgctcgctccactgcacaccgacgaatcacccttc
gccacagagcttcccagaccggacgccaagggcgtcaccttcgtccgccccgaactggtc
ggggaggtccggtacagcgagcgcaccggtgacgaccggctgcgtcaggccagctggcgg
ggcctgcggccggacaagacgcccgacgaggtggtgtgggaatag
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