Methylibium petroleiphilum: Mpe_B0011
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Entry
Mpe_B0011 CDS
T00470
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpt
Methylibium petroleiphilum
Brite
KEGG Orthology (KO) [BR:
mpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mpe_B0011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpt03400
]
Mpe_B0011
Enzymes [BR:
mpt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mpe_B0011
DNA repair and recombination proteins [BR:
mpt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mpe_B0011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABM96792
UniProt:
A2SMK3
LinkDB
All DBs
Position
RPME01:7816..10410
Genome browser
AA seq
864 aa
AA seq
DB search
MGRTAPSTQANADTPLSRYNAKRNFKVTSEPAGVPAKRSGKSKALCFVIQKHWASRLHYD
FRLELDGVMLSWAVPKGPSYDPALKQMAIHVEDHPISYNTFEGTIPKGQYGAGTVIIWDR
GTWEPEGDPREGMAKGKLIFKLHGQKLAGLWELVRISKPGEVKQEQWLLLKKRGDAWARP
TSEYDVISALPDSVVEKPLGPVEEREQRAGGTAAGTPGPSGEADLQLAVQAPLPAKLAPQ
LATLASAVPSGGSWIVETKFDGYRMLARVDGDDVRLFTRNGNDWTSKLKTVAAAVKDLGL
DSAWLDGEIVVINQAGVPDFNRLQNAIDNSRSKDISFFVFDVPFLGGMDLRKVPVASRRQ
VLNELFEQRQSEVVRFSEAFDVPPAHMLEAACKMGLEGVMVKRADAPYVSSRTDTWLKLK
CQQRQEFIVVGFTDRAGAPTEVGGLLLGYHEDGKLRYAGSVGTGWNSATGRELRSTLAKL
QVEKPALEAGAVKPGRWSKRPAGVERWVKPTMVVEVAFSEWTPDGHVRHPTFRGVRTDKP
ATQITREKAERPEGPVTETAAAVAGKPRTSVKVTNPDRVIDPSTGFKKVDLVRYYESIAD
WMLPHLKDRPVSLVRAPEGITGEQFFQKHPETKMPGMTELDPALWPGHSSLLAVGSAEAL
VSAAQMNVVEFHTWNSTIKRINEPDRVIFDLDPGEGVSWAHLQEAAVLMHTLLTELGLEA
WLKTSGGKGLHVVVPLAPKLDYDAVKGFSQAAVQHMAKTIPQRFVAKSGGSNRVGRIFID
YLRNGHGQTTASAFSARVRPGMGVSMPVSWEQLRELKSGSQWSIATAREYLSFQKSDPWA
AYWTSKQTLTKAMRLLGYAPKKAA
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
gtgggcaggacggcaccctcgacgcaggccaacgccgacacgccgctgtcgcgctacaac
gccaagcgcaacttcaaggtcacctctgagccggccggcgtaccggccaagcgctcaggc
aaatccaaggcgctgtgcttcgtcatccaaaagcactgggccagccggctccactacgac
ttccgcctcgagctcgacggcgtgatgctgagctgggcagtgccaaaggggccctcctac
gacccggccttgaagcagatggccatccacgtcgaggaccacccgatcagctacaacacc
ttcgagggcacgatcccgaagggccagtacggggccggcacggtcatcatctgggaccgc
ggcacctgggagccggagggcgacccccgggaggggatggccaagggcaagctgatcttc
aagctccacggccagaagctggccggcctctgggagctggtgcgcatctccaagcctggc
gaggtgaagcaggagcaatggctgctgctcaagaagcggggcgacgcctgggcccgcccg
acgtcggagtacgacgtcatctcggccctgccggacagcgtggtggagaagccgctcggg
ccagtcgaagagcgggaacagcgggctggcggaacggcggcgggaacgccagggccgagc
ggcgaagcggacctgcagcttgcggtccaggcgccccttccggccaagctggcgccacag
ctggccaccctggcctcggccgttcccagcggcggctcctggatcgtcgagaccaagttc
gacggctaccggatgcttgctcgcgtcgacggtgacgatgtccggctcttcacccgcaac
ggcaacgactggacgtccaagctcaagaccgtcgccgcggccgtgaaggacctcggactt
gactcggcctggctcgatggcgaaatcgtcgtcatcaaccaggctggcgtgccggacttc
aaccgcctccagaacgccatcgacaacagtcgctcgaaggacatcagcttcttcgtcttc
gacgtccccttcttgggcggcatggacctgaggaaggtgccggtggccagccgccgccag
gtgctcaatgagctcttcgagcagcgccagagcgaggtcgtacggttcagcgaggccttc
gacgtgccgccggcgcacatgctcgaggccgcctgcaagatggggctcgaaggcgtgatg
gtcaagcgcgccgacgcgccctacgtctcctcgcggacggacacctggctgaagctcaag
tgccaacagcggcaggagttcatcgtcgtaggcttcaccgaccgcgccggcgcgccgacc
gaggtcggcgggctactcctcggctaccacgaggacgggaagctgcgctacgccggctcc
gtcggtaccggctggaactcagccaccggccgggagctgcggtcaacgttggccaagctc
caggtcgagaagccggcgctcgaggcgggtgccgtgaagcccggccgctggtccaagcgc
cccgccggcgtcgagcgctgggtcaagcccaccatggtggtcgaggtggccttctctgag
tggacgcccgacgggcacgtccggcatcccaccttccgtggggtccggacggacaagccg
gcaacgcagatcacccgggagaaggcggagcggcccgagggcccggtgaccgagacggcg
gccgccgtggcagggaagcctaggacgagcgtcaaggtgacgaatccggaccgggtcatt
gacccgtcgaccggcttcaaaaaagtcgacctggtgcgctactacgagtccatcgccgac
tggatgctgccgcatctgaaagaccggccggtctcactcgtccgagcgcccgagggcatc
accggcgagcagttcttccagaagcatccggagaccaagatgccgggcatgacggagctg
gacccagctctgtggcccggccactcttcgctgctcgccgtcggcagcgccgaggccctg
gtgtcagcggctcagatgaacgtggtcgagttccacacctggaactccacgatcaagcgc
atcaacgagcccgaccgggtcatcttcgacctcgacccaggagaaggcgtcagctgggct
cacctgcaggaggccgcagtgctcatgcacacgctgctgacggagctcggcctcgaggcc
tggctgaagacaagcggcggtaagggcctccacgtcgtcgtgccgctggcgccgaagctg
gactacgacgccgtgaagggcttctcccaggcggcggtgcagcacatggcgaaaaccatc
ccgcagcgcttcgtcgccaagtccggtggctccaaccgagtcggacgcatcttcatcgac
tacctgcgcaacggtcacgggcagacgacggcatccgcgttctcggcccgggttcggcca
ggcatgggagtgtcgatgccggtgagctgggagcagctgcgcgagctcaagagcgggtcg
cagtggagcatcgcgacggctcgggagtacctgtcgttccagaagagcgacccgtgggcc
gcgtactggacgagcaagcagacgttgaccaaggcaatgagacttctcggctacgccccc
aagaaggcggcatag
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