Microbacterium rhizosphaerae: SM116_12415
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Entry
SM116_12415 CDS
T09585
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mrg
Microbacterium rhizosphaerae
Pathway
mrg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SM116_12415 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrg03400
]
SM116_12415 (mfd)
Enzymes [BR:
mrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SM116_12415 (mfd)
DNA repair and recombination proteins [BR:
mrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SM116_12415 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
MFD_D3
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WPR88572
LinkDB
All DBs
Position
complement(2730754..2734341)
Genome browser
AA seq
1195 aa
AA seq
DB search
MTVPGIARALASSSTFREAGAVASIDADVSLVDGLDAPLLATLVGKRRDAGRPGILLAIS
PTGRRAETLGAALQALMPGADVVHFPAWETLPHERLSPSPETVGRRLDVLRRVHEWDGSV
PLVVTASVRGALQPLAAGLTALAPVRLVVGARGHDLDAVIADLVARAYHRVDMVSRRGEF
AVRGGILDIFPPTADHPSRVEFFGDEVDQIRAFSVADQRSLPGEVREVELQAARELLLTD
EVRARARALMPDLPGLAGMLERMAEGIPVEGMESLTPVLVEDVVTLADYLPEGVAVTLVD
PERSVARATILAETNREFLDAAWSAATGGAAAPVDLGAGDFVSLSELREAAHSRGGVWWT
LSAFDSGAADIAAEIDEAEPDDEFRIRAASVPSFQGNVDGATAHVGELLTAGWAVVVAAS
GAGLADRARDVLAERGIAARRVDAVETPLEPGVAHVVVAELERGFEADGAKLAVLTESEF
YGRTISADGRVVKKLASRRRNVVDPLQLKAGDYVVHSTHGIGRFVELTQRQVSSGGRNPV
KSTREYLVLEYAPSKRGHPGDKLYVPTDQLDLLSKYIGGEAPTLSKMGGSDWAAAKGRAR
KAVRDIAVELVKLYSARMAAKGHAFGPDTPWQRELEEAFPFAETPDQLQTIDEIKADMEK
PIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFAERFAGFPV
KVRPLSRFQSDKQARETIEGLTDGSVDMVIGTHRILTEKVLFKDLGLMIIDEEQRFGVEH
KDQLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILTYVGARTDKQV
AAAIRRELLREGQVFYVHNRVQSIQRVAAHLAELVPEARIAVAHGQMGEHQLERVVDDFW
ERRADVLVCTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDE
QKPLSETAADRLETIAVNNDLGSGMQVALKDLEIRGAGNLLGAEQAGHIAGVGFDLYLRM
IGEAVATFRGEDAEGPTELRLELPVRARIPEEYIDSERLRLEAYQKLSAAASVTAKEDAI
DLVVDELRDRYGEPPAEVEGLLAVARLRRRAGRAGLADVVAMGPNLRVAPANLADSMRVR
LQRLYPKAKLVAGGEAVVVPLPTADGEALGDAELIAWVAQLLDQLWPVPQAAASV
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
gtgacagttcccgggatcgcgcgcgccctcgcatcgtcgtcgacgttccgcgaggcgggt
gccgtcgcatccatcgatgccgacgtctcgctcgtcgacgggctcgatgcgccgctgctg
gcgacgctcgtcgggaagcggcgcgacgccggcaggcccggcatcctgctcgccatctca
cccaccggccgccgcgcggaaacgctcggcgcggcgctgcaggcgctcatgccgggtgcc
gatgtcgtgcacttcccggcatgggagacgctgccgcacgagcggctgagccccagtccc
gagaccgtcgggcgccggctcgacgtgctgcgacgcgtgcacgagtgggacggctccgtg
cccctggtcgtgacggcatccgtccgcggggcgctgcagccgctcgcggccggtctcacg
gcactggcgccggtccggctcgtcgtcggcgcgcgcggccacgacctggacgccgtgatc
gcagacctggtcgcccgcgcctaccaccgggtcgacatggtgtcgcggcgcggcgagttc
gcggtgcgcggcggcatcctcgacatcttcccgccgaccgccgaccacccgtcgcgggtg
gagttcttcggcgatgaggtggaccagatccgcgcgttctcggtcgccgaccagcgcagc
ctcccgggcgaggtgcgcgaggtcgagctgcaggccgcgcgcgagctgctgctgaccgac
gaggtgcgcgcgcgggcgagggcgctcatgcccgaccttccgggactcgcggggatgctg
gagcgcatggccgagggcattccggtggagggcatggagtcgctcacgccggtgctcgtc
gaggatgtggtgaccctggccgactatctgcccgagggcgtcgccgtgactctcgtggac
ccggaacgctccgtggcgcgagcgacgatcctcgccgagaccaaccgggagttcctggat
gcggcgtggagcgcggcgaccgggggcgccgcggcgccggtcgatctcggcgccggcgac
ttcgtgtcgctgtccgagctgcgggaggccgcccacagccgcggcggcgtgtggtggacc
ctcagcgcattcgattcgggcgcggcggacatcgccgcggagatcgacgaggcggagccc
gacgacgagttccgcatccgggccgcctccgtcccctcgttccaggggaacgtcgacggc
gcgacggcgcacgtcggggagctgctgaccgcgggctgggccgtcgtggtggcggcatcc
ggggcgggactggccgatcgagcgcgcgacgtgctcgcggagcgggggatcgccgcgcgc
cgcgtcgacgccgtcgagacgccgctcgagccgggtgtcgcgcacgtggtcgtcgcggag
ctcgagcgcgggttcgaagccgacggtgccaagctcgccgtcctcaccgagtccgagttc
tacggccgcaccatcagcgccgacggccgcgtcgtgaagaagctggcgtcgcggcggcgc
aacgtcgtcgaccccctgcagctgaaggccggcgactacgtggtgcactcgacccacggc
atcggccggttcgtcgagctgacgcagcggcaggtgtccagcggcggtcgcaacccggtc
aagagcacgcgcgaatacctggtgctcgagtatgcgccgagcaagcgcggtcacccgggc
gacaagctctacgtgccgaccgatcagctggacctgctctccaagtacatcggcggcgag
gcgcccacgctgtcgaagatgggcggcagcgactgggcggccgccaagggccgtgcccgc
aaggcggtgcgcgacatcgccgtggagctcgtcaagctgtactccgcgcgcatggcggcg
aaggggcacgccttcggaccggatacgccgtggcagcgcgaactcgaggaggcgtttccg
ttcgccgagacccccgaccagctgcagacgatcgacgagatcaaggccgacatggagaag
ccgatcccgatggaccggctcctgtccggagacgtcggattcggcaagaccgaggtcgcg
gtgcgcgcggcgttcaaggccatccaggacggcaagcaggtcgcgatgctcgtgccgacg
accctcctcgtgaagcagcatctcgagacgttcgccgagcggttcgccggattccccgtg
aaggtgcggccgctgtcgcgattccagtccgacaagcaggcgcgagagacgatcgagggc
ctcacggacgggtcggtcgacatggtcatcggcacgcaccgcatcctcaccgagaaggtc
ctcttcaaagacctcgggctcatgatcatcgacgaggagcagcggttcggcgtcgagcac
aaggaccagctcaagaagctcaagaccaacgtcgacatcctcgccatgagcgcgacgccc
atcccgcgcacgctcgagatggcggtgaccggcatccgcgagatgtcgacgctgcagacg
ccgcccgaggaccggcaccccatcctcacgtacgtgggggcgcgcaccgacaagcaggtc
gccgccgccatccgtcgcgagctcctccgcgagggtcaggtcttctacgtgcacaaccgg
gtgcagtcgatccagcgggtcgcggcgcacttggccgagctcgttcccgaggcgcgcatc
gccgtcgcgcacgggcagatgggcgagcaccagctcgaacgggtggtcgacgacttctgg
gagcgccgcgccgacgtgctcgtctgcacgacgatcatcgagaccggtctcgacatctcc
aacgccaacaccatcatcatcgaccgtgccgacaagtacggattgtcgcagctgcaccag
ctgcgcgggcgcgtggggcgcgggcgcgagcgggcgtacgcgtacttcctgtacgacgag
cagaagccgctctccgagacggcggccgaccggctcgagacgatcgcggtgaacaacgat
ctcggcagcggcatgcaggtcgcgctcaaagacctcgagatccgcggagccggcaacctg
ctcggcgccgagcaggccggccacatcgcgggcgtcggcttcgacctgtacctgcgcatg
atcggggaggccgtggcgacgttccgcggagaggacgccgagggccccaccgaactgcgg
ctcgagctgcccgtgcgggcccgcatccccgaggagtacatcgacagcgagcggctgcgc
ctcgaggcgtaccagaagctgtcggcggcggcatccgtcacggccaaggaggatgcgatc
gacctcgtggtcgacgagctgcgcgaccgctacggcgagccaccggccgaggtggagggc
ctgctcgcggtcgcgcgcctgcgtcgccgggcaggccgggcggggctcgccgacgtcgtg
gcgatgggaccgaacctccgcgtcgcacccgcgaacctggcggactcgatgcgggtgcgc
ctgcagcggctgtatccgaaggcgaagctcgtggccgggggagaggccgtggtcgtcccg
ctgccgaccgccgacggcgaagcgctcggcgatgccgagctcatcgcgtgggtcgcgcag
cttctcgatcagctgtggccggttccgcaggccgcggcatccgtctga
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