Marinomonas rhizomae: KDW99_12680
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Entry
KDW99_12680 CDS
T08610
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mrhi
Marinomonas rhizomae
Pathway
mrhi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KDW99_12680 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrhi03400
]
KDW99_12680 (mfd)
Enzymes [BR:
mrhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KDW99_12680 (mfd)
DNA repair and recombination proteins [BR:
mrhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KDW99_12680 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AAA_22
Glyco_tran_WecG
LcrG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UTV98128
LinkDB
All DBs
Position
2672644..2676057
Genome browser
AA seq
1137 aa
AA seq
DB search
MSETVSITLKPGFKNLISGLDGSRKALQLLAIAAQHKQPMLFMANTVAELNELEDEIQFL
NQNKREILRFSDWETLPYDAFSPHQDIISQRLETLAKLTETKNPIVLTTVASCITRLCPK
HHLDAQRFHLEEGQELPLEQLSRKLTNAGYLNVENVHEHGEYAIRGALMDVYPMGAENPI
RIDWFDNEIESIRWFDPETQRSISKVAEIKMLPAKEFPTTSQGIQQFRQAFRERFEANPL
SSPIYQDISSGIIPAGIEYYLPLFFEQTASVFDYLPDNTLIVRSDNFNDQFASIQLDFRS
RHESLNYNIERPILKPDELCLREDELFGRLNQYTNIIFSVTGDHPAYKALDTVKIDSKAA
QPLGKLQDFLAGTSARVLIVAESAGRREALLDLLKKHNIKPKQVDSWEAFTKSTKSLAIT
EGNIGRGFIINEALALIPESEILGERVSQHRRRNKQNNISEDAIIRNLTELRLNAPVVHI
DHGVGRYLGLTNLQIDGQETELLTLGYANDAKLYVPVSSLQLISRYTGADEDTAPLHKLG
TDKWSVAKQKAAEKARDTAAELLEIYAKREARVGYAFAKPDDQYELFSAGFPFEETPDQQ
MAIDAVMADMSAKKPMDRLVCGDVGFGKTEVAMRAAFLAVQDGKQVAVLVPTTLLAQQHY
ENFCDRFADWPVEIELLSRFRSGKQSNTSIDRLESGKADIVVGTHKLIQSDIKFANLGLV
IIDEEHRFGVKQKEQFKALRAEVDILTLTATPIPRTLNMSLSGIRDLSIIATPPAKRLSV
KTFVKQKDEHQIKEAILRELHRGGQVYYLHNEVQTIQKAAEELEELIPEARVIVGHGQMR
ERELEQVMSDFYHKRANVLVCSTIIETGIDIPNANTIIIERADKFGLAQLHQLRGRVGRS
HHQAYAYLLTPNDRKVTGDAEKRLEAITLADTLGAGFTLATHDLEIRGTGELLGDGQSGH
IEHVGFSLFMDMLDRAVKSLKNGESPDIDITSPAQTDVNLRVPALIPEDYLGDVHSRLIL
YKRIASAKSSDELKDLQVEMIDRFGLLPDATKNLFRQTELKLKAESLGINKIEANAKEGK
IFFNSKTPVDPMKLIRLIQTKPDIYKLVGSDTLKFLAPMNSAEERFQQTTMTLELLH
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaccgtatcaatcaccctaaaacccggcttcaaaaacttaattagcggccta
gatggcagccgaaaagcattacaactgctagcaatagcagctcaacataaacaacctatg
ctttttatggccaacacggtcgccgaactcaatgagcttgaagatgaaatacagtttcta
aatcaaaacaaaagagaaatattaagatttagcgattgggaaaccttaccatacgacgcc
ttctcgccacaccaagacattatatctcagcgtttagaaacgctggctaagcttaccgaa
acgaaaaatccgattgtactcaccacggttgcttcctgcataacgcgtctttgccctaaa
caccaccttgatgcccagcgctttcatttggaagaaggacaagaacttcctctggagcaa
ctatcaagaaagctaactaacgcgggctacttaaatgtagagaacgtccacgagcatggt
gaatacgccatccgcggcgccttgatggatgtttatccaatgggtgcggaaaacccaatc
aggatagattggttcgacaatgaaatagaatcgattcgatggtttgatccagagacacag
cgcagcattagcaaggtagctgaaattaaaatgcttccagcaaaagagttcccaaccact
tcacagggaattcagcagtttcgccaagcttttagagagcgctttgaagccaacccactt
tcaagcccgatataccaagatatctccagtggtattataccagcaggcattgaatactat
ttacctttattctttgaacaaaccgctagcgtatttgactacctacctgacaacactctg
atcgttcgctccgacaacttcaacgatcagtttgcgagtattcaacttgatttccgtagc
cgccacgaatccctgaattacaacatcgagcgccctattttaaagcccgatgaactgtgc
ctacgcgaagacgaactttttggacgacttaatcaatacacgaacattattttttcagtg
acaggtgatcatcctgcatataaagcacttgataccgttaaaattgattcaaaagcagca
caaccacttggaaaactacaagactttctggcaggaacctcagctagagtattaattgtc
gctgagtctgcaggccgccgagaggccttgcttgacctgttaaaaaaacacaacattaaa
ccaaagcaagttgacagctgggaagcattcactaagtcgacaaaatcactcgccattacc
gaaggcaatattggccgcggcttcatcattaatgaagcgcttgcgctaattcctgaaagt
gaaatattaggcgaacgcgtttctcaacaccgtcgacgcaataaacaaaacaacatcagc
gaagatgcgatcattcgcaacctcactgagttaagattaaatgcacccgttgtgcatatt
gatcacggggttggccgctaccttggccttactaatttacaaatagacggacaagaaaca
gagctcctcacgcttggctacgccaatgacgccaaactttatgtacccgtttcgtcatta
cagctcatttccagatacacgggcgcagatgaagataccgcaccactgcacaagcttggc
actgacaaatggagtgtagcgaaacaaaaagcagctgaaaaagcccgcgacacagccgcg
gagttactggaaatatacgccaaacgtgaggctagagtcggttatgcatttgctaagcca
gacgaccaatatgagctcttctcggcaggattcccgtttgaagaaacacctgaccagcaa
atggcaatcgatgcagtgatggcggatatgtccgctaagaaaccaatggatcgcttggtc
tgtggtgacgtaggctttggtaaaacagaagttgctatgcgagccgccttcttagctgtt
caagatggcaagcaagtggccgttctcgttccaaccacactgcttgcccaacagcactat
gaaaatttttgcgaccgttttgccgactggcctgtagagatcgaactattgtcgagattt
cgttcaggcaaacaatccaacacttctattgatcgactagaatcaggcaaagcagacata
gtcgttggcacacataaactcatccaaagtgacatcaagtttgctaatctaggcctagtc
attatcgatgaggaacaccgttttggggtcaagcaaaaagagcaattcaaagctctgcga
gcagaagtagacatactcacactaaccgccaccccaattcctcgaacgctaaacatgtct
ttgtctggcattcgtgatttatccattattgcgacaccaccagccaaacgtttatccgta
aaaacatttgtaaaacaaaaagacgaacatcaaataaaagaagcgattttgcgcgaactt
catcgtggcgggcaagtttattacttacacaatgaagtacaaaccatccaaaaagccgca
gaagaattggaagagttaattccagaagctcgtgttattgtgggtcacggacagatgcgt
gaaagagaactggaacaagtcatgtcagacttctaccacaaaagagccaacgtgctcgtt
tgttctaccattatagaaacaggtatcgatataccgaacgccaacactattatcattgaa
cgagcagataagtttggcttggcacaactgcatcaattacgtggtcgagttggccgctcg
caccatcaagcctatgcctacttattaacaccaaatgaccgtaaagtaactggcgatgca
gaaaaacgcctagaagccattacacttgctgatactctcggcgcaggatttaccttagcc
actcacgatttagagattcgcggcacaggcgaattattgggtgatggtcaaagtggtcat
attgaacatgttggcttctctctatttatggacatgttagaccgagcggttaaatccctc
aaaaatggtgagtctccagacatagatatcacatctccagcacaaactgatgtgaactta
cgagttcccgcacttattccggaagattatttaggtgatgtacattcacgattgattctg
tataagcgcattgccagtgcaaaaagcagtgatgaattaaaagaccttcaagtggaaatg
attgaccgctttgggctgctgcctgacgcaacgaaaaatctatttaggcaaacggaatta
aagcttaaagcggaaagtcttggcattaataagattgaagccaatgccaaagaaggtaaa
atcttctttaatagtaaaacacctgtcgacccaatgaagttgattagacttattcaaacg
aaacccgacatctacaagctggttggctctgatactttgaaattcttagccccaatgaac
agcgcagaagagcgtttccaacaaacgacaatgactttggaattattacattga
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