Microbacterium resistens: K8F61_00455
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Entry
K8F61_00455 CDS
T07900
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mrn
Microbacterium resistens
Brite
KEGG Orthology (KO) [BR:
mrn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mrn03019
]
K8F61_00455 (hrpA)
Enzymes [BR:
mrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K8F61_00455 (hrpA)
Messenger RNA biogenesis [BR:
mrn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K8F61_00455 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
ResIII
T2SSE
nSTAND3
NACHT
HA2_N
SLFN-g3_helicase
AAA_33
AAA_30
UvrD-helicase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UGS26745
LinkDB
All DBs
Position
complement(95362..99372)
Genome browser
AA seq
1336 aa
AA seq
DB search
MSAPLPVITYPPELPVSAARDEIAAAIRDHQVVVVAGATGSGKTTQLPKICLELGRERIA
HTQPRRLAARTIAERVAEELDVELGGLVGYKVRFTDQVSADTRIALMTDGILLNEIHRDR
LLRRYDTIIIDEAHERSLNVDFLLGYLHRILPERPDLKVVITSATIDPESFARHFAAPPA
EPGGEPTPAPVIEVSGRTFPVEIRYRPLVDDAEGASAPAGEPADEVSAIVSALRELDREA
PGDVLVFLPGEAEIRDAADAVRAAYAGDRAPTEVLPLYGRLSAAEQHRVFERSSVAGLRR
RVILATNVAETSLTVPGIKYVVDTGTARISRYSNRSKVQRLPIEAISQASAAQRSGRAGR
TSSGIAIRLYSEDDYARRPEYTEPEILRTSLASVVLQMLSLGFGDIARFPFLTPPDARGV
RAAFDLLVELGAVSAPSGRGAEDAPRLTRIGREIARMPIDPRFARMLVEARSAGPRVSRD
VLAIVAGMSIQDVRERPSAEAPQGVRDEADRAHARFADPTSDFLTLLNLWNHLREQQRAL
GSSAFRRLCRSEHLNYVRVREWFDVHRQLRSLLPRDRKEESTDATGTADPDAVHRALLAG
LLSQIGVLDERTAAKGPAKTPSKEQRRRIAEYRGARGIRFSIFPGSALRKKSPQAVMAAE
VVETSRTFARTVAAIDPAWAESLAGDLAKRQVSEPHWSKDAGSAVAFEKVTLFGVEIIPR
RRVQFARIDRAGARELFVRHALVDGEWDPSRLDKRVSAFWRSNAELRRRLEKLEERERRR
DILAGDEAVFRFYDERIPAEVFDVRSFESWWREALATTPKLLVMREGDLLDDDGRADQGE
FPTRWTQGDQVLGLAYRFEPGALDDGVSVVIPLALLQQIRDTGFDWQVPGLRAELVTALL
RALPKAIRRHVVPAADWADRFGQELAASGPEHHGGLPERSLTEALAKLVQPLANQPVSTA
DFDQDRVPGHLRMNFRAVDERGRVVGSGRDLGELQSRLADRSRSSVARSVAKAAGPAGAA
RVAEAGPAGPGARAGIERSGIGTWDGVAEAVGGALPEVLDTRVAGGVVRGYPALVDEGKS
VAVRVEATADAALAATRDGVLRLVLLAVPSPVSYVQEHLTSAEKLALAASPYASVAALIE
DCRAAVVRALIDEATGTGGAEGSGVVRTAEEFARVRDVVSSAIVDRLFACVSLVARILTR
SRDVERAIKQQNSLALLGPLNDVRTQLAGLLPPGFVSSTGVDRLTHLPRYLEAMLDRLKT
LAEAPGKDRARMTEYERVAALYTDAGGTIPLSPGAPDALVEVRWLLEEYRVSVFAQRLGT
AQPVSPQRIAKALASR
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgccccttcccgtgatcacgtacccgccggagctgccggtcagcgcggcgcgc
gacgagatcgccgctgccatccgcgaccaccaggtggtcgtggtcgcaggcgccaccgga
tcgggcaagacgacgcagctgccgaagatctgcctggagctggggcgcgagcgcatcgcg
cacacccagccgcggcggctcgccgcccgcacgatcgcggagcgcgtggcggaggagctg
gacgtggagctcggcggcctcgtcggctacaaggtccgcttcaccgaccaggtgtccgcc
gacacgcggatcgcgctgatgacggacgggatcctcctcaacgagatccaccgcgaccgg
ctgctgcgccggtacgacacgatcatcatcgacgaggcgcacgaacgctccctcaacgtc
gacttcctcctcgggtacctgcacaggatcctcccggagcgcccggatctgaaggtcgtc
atcacctccgcgaccatcgacccggagagcttcgcacggcatttcgccgcccctcccgcg
gagccggggggcgagccgacgcccgcgccggtgatcgaggtctccggccggaccttcccg
gtggagatccgctaccggccgctggtggacgacgccgagggggcgagcgcaccggccgga
gaaccggccgacgaggtgtccgcgatcgtctcggcgctgcgcgagctggaccgcgaggcc
cccggggacgtgctcgtgttccttccgggcgaggccgagatccgtgacgcggccgacgcc
gtgcgcgccgcgtacgccggcgaccgcgcccccaccgaggtcctgccgctctacggccgc
ctgtccgccgcggagcagcaccgggtgttcgaacgctcctcggtcgccgggctccgtcgc
cgcgtgatcctcgccaccaacgtcgccgagacgagcctcaccgtccccggcatcaagtac
gtcgtggacaccgggaccgcccgcatctcgcgctacagcaaccgctcgaaggtgcagcgc
ctcccgatcgaggcgatctcccaggcctcggccgcgcagcgctccggccgcgcgggccgc
acgagctccggcatcgcgatccgcctctacagcgaggacgactacgcgcggcgaccggag
tacacggagccggagatcctgcgcacctccctcgcctccgtcgtcctgcagatgctgagc
ctggggttcggcgacatcgcccgtttccccttcctcacccctcccgacgcgcgaggcgtc
cgcgccgcgttcgacctgctggtcgagctcggcgccgtgtcggcgccgtccggccgggga
gccgaggacgcgccgcggctgacccgcatcgggcgcgagatcgcccgcatgccgatcgat
ccgcgcttcgcccggatgctggtggaagcacggtccgccggcccgcgggtgtcgcgcgac
gtgctcgccatcgtcgcggggatgtcgatccaggacgtccgcgagcgcccctcggccgag
gcgccgcagggggttcgggacgaggccgaccgcgcgcacgcccggttcgcggacccgacg
agcgacttcctgaccctcctcaacctctggaaccacctgcgcgagcagcagcgcgcgctc
gggtccagcgcgttccggcggctgtgccgcagcgagcacctgaactacgtccgcgtacgg
gagtggttcgacgtgcaccgtcagctgcgctccctcctgccgcgggaccgcaaagaggag
tccacggacgccacgggcaccgccgatccggacgccgtgcaccgcgcgctgctggcgggg
ctcctctcgcagatcggggtcctggacgagcgcacggccgccaaggggccggccaagacc
ccgtccaaggagcagcgccggaggatcgcggagtaccgcggcgcgcgcggcatccggttc
tcgatcttccccggctcggcgctgcgaaagaagtcgccgcaggcggtcatggccgccgag
gtggtggagacgtcgcggaccttcgcccggacggtggcggcgatcgacccggcgtgggcc
gagagcctggccggggacctcgccaagcgtcaggtctccgagccgcactggtccaaggac
gccgggtccgccgtcgcgttcgagaaggtgaccctgttcggggtcgagatcatcccgcgc
cggcgcgtgcagttcgcccgcatcgaccgcgccggcgcgcgggagctgttcgtgcgccac
gccctcgtcgacggcgagtgggatccgtcccgcctcgacaagcgggtgagcgcgttctgg
cggagcaacgcggagctgcggcgccggctggagaagctcgaggagcgcgagcggcgtcgg
gacatcctcgccggggacgaggccgtcttccgcttctacgacgagcggatcccggcagag
gtcttcgacgtccgctccttcgagtcctggtggcgcgaggcgctcgcgacgacgccgaag
ctgctcgtcatgcgcgagggcgacctgctcgacgacgacggacgcgccgaccagggcgag
ttcccgacccgctggacgcagggcgaccaggtgctgggactggcgtaccgcttcgagccc
ggggcgctcgacgacggcgtgagcgtggtgatcccgctggccctgctccagcagatccgc
gacacggggttcgactggcaggtccccggcctgcgcgccgagctggtgaccgctctgctg
cgcgccctcccgaaggcgatccgccgtcacgtcgtccccgccgccgactgggcggatcgc
ttcggccaggagctcgcggcgagcggtccggagcaccacggcggcctccccgaacggagc
ctcaccgaggcgctcgcgaagctcgtgcagccgctggcgaaccagccggtctcgacggcg
gacttcgaccaggaccgcgttcccggccacctgcggatgaacttccgcgccgtggacgag
cgcggtcgcgtggtcggatccggccgggacctgggcgagctgcagtcccgcctcgccgac
cgttcccgcagcagcgtcgcccgctcggtcgccaaggccgcgggtcccgccggggccgcc
cgcgtcgccgaggcgggaccggcgggacccggcgcgcgtgcggggatcgagcgatcgggg
atcggcacctgggacggggtcgcggaggccgtcgggggcgcgctgccggaggtcctggac
acgcgtgtggccggcggggtcgtccgcggctacccggcgctggtcgacgagggcaagagc
gtggcggtgcgcgtcgaggcgaccgccgacgccgccctcgccgccacccgtgacggggtc
ctccgcctcgtcctgctcgcggtgccctcgccggtctcgtacgtgcaggagcatctcacc
agcgccgagaagctcgcgctggccgcctcgccgtacgcgtccgtcgccgccctgatcgag
gactgccgtgccgccgtcgtgcgcgcgctgatcgacgaggcgaccgggacgggcggcgcg
gagggatccggcgtcgtccggaccgcggaggagttcgcgcgggtccgcgacgttgtctcc
tcggccatcgtcgaccgcctgttcgcctgcgtctcgctggtcgcgcggatcctcacccgc
tcgcgggacgtcgagcgcgcgatcaagcagcagaactccctcgcgctgctcggcccgctg
aacgacgtccgcacccagctcgcgggccttctcccgccgggcttcgtctcgtccaccggc
gtcgaccggctcacgcacctgccgaggtacctggaggccatgctcgaccggctgaagacc
ctcgcggaggccccgggcaaggaccgcgcgcgcatgacggagtacgagcgcgtggcggcg
ctctacaccgacgcgggcgggacgatcccgctctcccccggcgcaccggacgcgctcgtc
gaggtgcgctggctgctggaggagtaccgcgtgagcgtcttcgcccagcgactcggcacc
gcgcagcccgtgtccccgcagcgcatcgcgaaggcgctcgcgtcccgctga
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