Microbacterium resistens: K8F61_00780
Help
Entry
K8F61_00780 CDS
T07900
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mrn
Microbacterium resistens
Pathway
mrn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K8F61_00780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrn03400
]
K8F61_00780 (mfd)
Enzymes [BR:
mrn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K8F61_00780 (mfd)
DNA repair and recombination proteins [BR:
mrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K8F61_00780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UGS26804
LinkDB
All DBs
Position
168153..171749
Genome browser
AA seq
1198 aa
AA seq
DB search
MTVQGIIRALDQEGSPFRDALTWAQTDADLLAVGGIDAPTIAGLLERRAAAGRPAALLVV
VPTGRRADSLAAALASYIPDGEILSFPAWETLPHERLSPSPDTVGRRLDVLRRMRRFAGA
RPLVVVASVRAALQPVAAGLGDVEPLVLRVGGRGFDLDAIAADLVERAYSRVDMVSRRGE
FAVRGGILDVFPPTAEHPARVEFFGDEVDQIRLFSVADQRSLPGDVGEVELAASRELLLT
PEVRARAGELVEAYPGIAQMLQRMSEGIPVEGMESLLPVVAGPVVPLSDYLPEGAAVALV
DPERAGARAASLGETNREFLEAAWSAATAGATAPIDLQQGDFLSVAELREAVHEHGGVWW
RLSAFDPGSEDAAFDQGADGQAAAPIPSFHGNVDGAVEFVAARVAEGWRVVLVASGAGLV
DRARDVLADRGVAARVVAELPDVPDAGVATLVVGSVEAGFQVPAAGLAVLTENEFYGRTI
GGDQRVVKKLASRRKNVVDPMQLKAGDFVVHQTHGIARFVEMTQREVSSGGRNATKTTRD
YLVLEYAPSKRGYPGDKLYVPTDQLDLLSKYVGGEAPTLSKMGGSDWAAAKGKARKAVRD
IAVELVKLYSARMAAKGHAFGPDTPWQRELEEAFPFAETPDQLQTIDEIKADMERPIPMD
RLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFTERFAGFPVKVRPL
SRFQTDKEARQVVDGLLDGTIDMVIGTHRILTEKVRFKDLGLMIIDEEQRFGVEHKDALK
KLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILSFVGAKSDKQVAAAIR
REILREGQVFYVHNRVQSIQRVASEIAELVPEARIAVAHGQMGEHQLEQVVDDFWERKFD
VLVSTTIIETGLDISNANTIIIDRADRYGLSQLHQLRGRVGRGRERAYAYFLYDDAKPLS
ETAADRLQTIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAV
ATFRGEETETGAELRLELPVDARIPDFYIDSERLRLEAYQKLSSAATATAPDDAIDLVVE
ELTDRYGAPPEEVEGLVAVARLRRRAAKAGLTDVVAMGSNLRIAPARFEDSIKVRLQRLY
PKAKLVGGGEALVVPMPTVPAAVGVGLEAPPAGELLEWVGQLFTALFPASVPDLPAEG
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
gtgactgtacaggggatcatccgtgccttggaccaggagggttcgccgttccgcgacgcc
ctgacatgggcgcagaccgacgccgatctgctggccgtcggcgggatcgacgccccgacg
atcgccgggctgctggagcggcgcgcggccgccgggcgcccggccgccctgctggtggtc
gtgcccaccgggcgccgtgccgactcgctggccgcggcgctggcgtcgtatatccccgac
ggtgagatcctgtcgttcccggcgtgggagacgctgccgcacgaacgtctgagcccgagc
ccggacacggtcggccgccggctggacgtcctgcgacggatgcgccgcttcgcgggcgcg
cgcccgctcgtcgtggtcgcctccgtccgggccgcgctccagcccgtcgccgcgggactc
ggcgacgtcgagccgctcgtgctccgtgtcggcggacgtggcttcgacctcgacgcgatc
gccgcggacctcgtggagcgggcgtactcgcgggtggacatggtgtcccgccgcggggag
ttcgccgtccgaggcggcatcctcgacgtgttcccgcccacggcggagcaccccgcccgc
gtcgagttcttcggcgacgaggtcgaccagatccggctcttctccgtcgcggaccagcgc
tccctccccggggacgtcggggaggtcgagctggcggccagccgcgagctgctgctgacg
cccgaggttcgggccagggcgggggagctcgtggaggcgtaccccggcatcgcgcagatg
ctgcagcggatgagcgagggcatccccgtggaggggatggagtcgctgctgccggtcgtc
gccggccccgtcgtccccctgtccgactatcttcccgagggcgccgccgtcgcgcttgtc
gatccggagcgggccggtgcgcgcgcggcgagcctcggcgagaccaaccgcgagttcctg
gaggcggcgtggagcgcggccaccgcgggggccaccgcgccgatcgacctccagcagggc
gacttcctctccgtcgcggagctgcgcgaggccgtgcacgagcacggcggcgtctggtgg
cggctgagcgccttcgaccccggctccgaggacgccgccttcgaccagggggcggacggc
caggcggcggcaccgatcccgtccttccacggcaacgtcgacggcgcggtggaattcgtc
gccgcgcgcgtggccgaggggtggcgagtcgtgctggtcgcgtccggcgccggtctcgtc
gaccgtgcacgggacgtgctcgccgaccggggcgtggcggcccgggtggtggcggagctc
cccgacgtcccggacgccggggtggccacgctcgtcgtcggcagcgtcgaggccggtttc
caggtgccggcggccggtctcgccgtcctgacggagaacgagttctacggccgcacgatc
ggcggcgaccagcgcgtggtgaagaagctcgcctcgcggcgcaagaacgtcgtggatccg
atgcagctcaaagccggcgacttcgtcgtgcaccagacgcacggcatcgcgcggttcgtc
gagatgacccagcgcgaggtctcctccggcgggcgcaacgccaccaagaccacgcgcgac
tacctggtcctggagtacgcgccgtccaagcgcggttacccgggggacaagctgtacgtc
cccacggaccagctggatctgttgtccaagtacgtcggaggcgaggcgccgacgctgtcg
aagatgggcggcagcgactgggcggcggccaagggcaaggcgcgcaaggccgtgcgcgac
atcgccgtcgagctggtgaagctgtactcggcgaggatggccgcgaaggggcacgcgttc
ggccccgacaccccgtggcagcgggagctggaggaggccttcccgttcgccgagaccccg
gatcagctccagacgatcgacgagatcaaggcggacatggagcggccgatcccgatggac
cggctgctgtccggcgacgtcggcttcggcaagaccgaggtcgccgtccgagccgcgttc
aaggccatccaggacggcaagcaggtcgccatgctggtgccgacgacgctcctcgtcaag
cagcacctggagacgttcaccgagcggttcgcgggattcccggtgaaggtgcgcccgctc
tcgcgcttccagaccgacaaggaggcgcgacaggtcgtcgacggtctgctcgacggcacg
atcgacatggtgatcggcacgcaccggatcctcaccgagaaggtgcggttcaaggacctc
gggctgatgatcatcgacgaggagcagcggttcggcgtcgagcacaaggacgcgctgaag
aagctcaagacgaacgtcgacatcctggcgatgagcgcgacgccgatcccgcggacgctg
gagatggcggtgaccggcatccgggagatgtcgacgctggcgaccccgcccgaggaccgc
caccccatcctctccttcgtgggggccaagagcgacaagcaggtcgccgcggcgatccgt
cgggagatcctccgcgaggggcaggtcttctacgtccacaaccgggtgcagtcgatccag
cgcgtggcctccgagatcgccgagctcgtccccgaggcacggatcgccgtcgcgcacggc
cagatgggcgagcatcagctggagcaggtggtggacgacttctgggagcggaagttcgac
gtgctggtgtcgacgacgatcatcgagaccggactggacatctcgaacgcgaacacgatc
atcatcgaccgggcggatcgctacgggctgtcgcagctccaccagctccggggacgggtc
gggcgcgggcgcgagcgcgcctacgcctacttcctctacgacgacgccaagccgctgtcg
gagacggcggccgaccggctgcagaccatcgccgtcaacaacgacctcggctccggcatg
caggtggcgctcaaggacctggagctgcgcggcgcggggaaccttctgggcgccgagcag
gctggccacatcgccggcgtcggattcgacctgtatctgcggatgatcggcgaggccgtg
gcgacgttccgcggcgaggagacggagaccggggcggagctgcgcctggaactgccggtc
gacgcgcgcatcccggacttctacatcgacagcgagcgactgcggctcgaggcgtaccag
aagctgtcctccgcggcgacggccacggctccggacgacgcgatcgatctcgtggtcgag
gagctcacggaccggtacggtgcgccgccggaggaggtggaggggctcgtcgcggtcgcg
cgcctgcgccgccgcgccgcgaaggccgggctcaccgacgtcgtcgccatggggtcgaac
ctgcggatcgcgcccgcgcgcttcgaggactcgatcaaggtccgtctgcagcggctctat
ccgaaggcgaagctcgtcggcgggggagaggcactggtcgtgccgatgcccacggtcccc
gccgccgtcggcgtggggctggaggcgccgcccgcgggcgagctgctggagtgggtgggt
cagctcttcacggcgctgttccccgcctccgtccccgacctgccggccgagggctga
DBGET
integrated database retrieval system
