Microbacterium resistens: K8F61_01610
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Entry
K8F61_01610 CDS
T07900
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mrn
Microbacterium resistens
Pathway
mrn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K8F61_01610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrn03400
]
K8F61_01610
Enzymes [BR:
mrn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K8F61_01610
DNA repair and recombination proteins [BR:
mrn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K8F61_01610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UGS26949
LinkDB
All DBs
Position
complement(345635..348142)
Genome browser
AA seq
835 aa
AA seq
DB search
MASAGAAGTEQIVTIGGRRLRVTNLEKVVYPETGTTKGEIIDYYARIAPVLLPAVSGRPV
TRKRWVDGVGTAEEPGAVFFAKQLEPGAPSWLPRLPIEHSGGPKEYPLIEEVAALVWCAQ
VASIELHVPQWRFGPGGERRHPDRLVLDLDPGPGADLAQCAEVARIARGILDGMGLDLVP
VTSGSKGIHLYAALDGGQTSDQVSAVAHELARAIEADHPDLAVSSMAKAVRAGKVFIDWS
QNNAKKTTIAPYSLRGRPQPWVAAPRTWEELDDPALRQLSFTEVLDRVADGIDPFHALAP
TEEDRLDAYRAKRDAARTPEPVPDARARGRSSRADEAREEPTTSGGERRFVIQEHHARRL
HFDLRIEDAGVLVSWAVPKGVPPTAERNHLAVMTEPHPIEYLTFAGTIPAGEYGAGEMSV
WDTGTVRLEKWRDDEVIGTFTGRPGGPLGVARLALIRTSGAGEKSSWLLHRMVDRSARTE
KPRPPARRASAAPSRSGAAAPVPEGDEPPAPMLAEHGTPGTARRLGTPSWVEVKWDGIRA
LGTWTGSGRGEDGRFRLHARSGIDITDRYPELTADGAPRFAVADAVVDGEIVALDASGRP
SFARLQARMHLTRGREIEREAVRTPVRYHLFDLLRLDGHDVTRLPLRDRRELLEGIVEGT
DDAIVLPPVFDDLDAALEASDRLRLEGVVVKDAASAYLPGTRSSRWLKIKHTRTQEAVIV
GIRPGKGARSGTIGSLLLAVPAPDTESGLRYIGRVGTGFNDRTLRDLQQRLEPLRIPRRA
VDGVPVADAGDAVWLSPDLVGEVEFANWTPDGSVRHARWRGLRPDKSPSQVRVES
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgccggagccgccggaaccgagcagatcgtgacgatcggcggccgccgcctg
cgcgtgaccaacctggagaaggtggtctaccccgagaccgggacgaccaagggcgagatc
atcgactactacgcccggatcgcgcccgtgctgcttccggccgtctcgggccgacccgtc
acgcgcaagcggtgggtggacggcgtcggtacggccgaggagcccggggccgtcttcttc
gccaagcagctcgagcccggcgcgccgagctggctcccgcgtcttcccatcgagcactcc
ggcggaccgaaggagtatcccctcatcgaagaggtggccgccctcgtctggtgcgcacag
gtcgccagcatcgagctgcacgttccgcagtggcgattcggcccgggcggcgagcgccgt
catcccgatcggctcgtcctggatctggatcccggccccggcgcggatctcgcgcagtgc
gccgaggtggcgcggatcgcgcgcgggatcctggacggcatgggactggacctcgtcccc
gtcaccagcggcagcaagggcatccacctgtacgcggccctcgacggcgggcagacgagc
gatcaggtctccgccgtcgcccacgaactggcgcgggcgatcgaggcggaccatcccgac
ctcgccgtcagcagcatggccaaggcggtccgcgccggcaaggtcttcatcgactggagc
cagaacaacgccaagaagaccaccatcgccccttactcgctccgcggccggccacagccc
tgggtcgccgcgccgcgcacgtgggaggagctggacgaccctgcgctgcgccagctctcg
ttcacggaggtcctcgaccgggtcgccgacgggatcgaccccttccacgccctcgcgccg
accgaggaggaccgcctcgacgcctaccgcgccaagcgcgatgccgcgcgcacgcccgag
cccgtcccggacgctcgggcgcgtggacggtcttcgcgcgcggacgaggcccgcgaggag
ccgacgacctcgggcggcgagcgccgattcgtgatccaggagcaccacgcccggcgcctg
cacttcgatctgcggatcgaggacgccggagtgctggtgagctgggcggttcccaagggc
gtgccgcccaccgcggaacgcaaccacctggccgtgatgaccgagccgcacccgatcgag
tacctgaccttcgcagggaccatccccgccggggagtacggggccggggagatgagcgtc
tgggacaccggcacggtccgcctggagaagtggcgcgacgacgaggtgatcgggacgttc
accggtcgccccggcggaccgctcggcgtcgcccggctcgcgctcatccgcacctccggt
gcaggagagaagtcgtcctggctgttgcaccgcatggtcgaccgctccgcgcgcacggag
aagccccgcccgcccgcccgccgtgcatccgctgccccgtcccggtccggtgccgccgcc
ccggtgccggagggcgacgagccccccgcgcccatgctcgcggagcacggcacacccggc
acggctcgccgcctcgggacgccgagctgggtggaggtcaagtgggacggcatccgtgcg
ctgggcacatggaccgggtccggtcggggcgaggacggccggttccgactgcatgcccgc
agcggcatagacatcaccgaccgctatccggagctcaccgcggacggcgcaccgaggttc
gcggtcgccgacgccgtcgtcgacggggagatcgtcgccctcgacgcctccggacggccg
agcttcgcgcgattgcaggcgcggatgcacctcacccgcggcagggagatcgaacgcgag
gcggtgcggaccccggtccgataccacctcttcgatctccttcggctggacggccatgac
gtcacccggctccccctgcgggatcgtcgcgagctcctggagggcatcgtcgagggcacc
gacgacgcgatcgtcctccctcccgtgttcgacgatctcgacgctgcgctcgaggcgagc
gaccggctgcgactggaaggcgtggtcgtcaaggacgcggcctcggcgtacctccccggg
acgcgctcatcgcggtggctcaagatcaagcacacgcggacgcaggaggccgtgatcgtc
ggcatacgacccgggaagggcgcgcggtcggggaccatcggatcgctgctgctcgcggtg
cccgcgccggacaccgagagcggactgcgctacatcggccgggtcgggacggggttcaac
gatcgcacgctgcgcgatctccagcagcgcctcgagcctctgcgcatcccccgccgcgcg
gtggacggcgtccccgtcgccgacgccggcgatgccgtgtggctctccccggacctcgtc
ggcgaggtggagttcgccaactggacgccggacggctcggtccgtcacgctcgatggcgg
gggctccggccggacaagagcccctcgcaggtccgggtcgagtcctga
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