Melioribacter roseus: MROS_1627
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Entry
MROS_1627 CDS
T02176
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mro
Melioribacter roseus
Pathway
mro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MROS_1627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mro03400
]
MROS_1627
Enzymes [BR:
mro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MROS_1627
DNA repair and recombination proteins [BR:
mro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MROS_1627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AroM
Glyco_tran_WecG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFN74861
UniProt:
I7A4P5
LinkDB
All DBs
Position
1905964..1909341
Genome browser
AA seq
1125 aa
AA seq
DB search
MDKQIIEKLTPYNKLLEPLKRKQKKVFVSPLEGSFKSLFVQSFYRDDMRILIFAASPREL
KELSVELSLLGLSEHLIALENFEGDDIQEKLTDISKRKSFILVSTYELLKVKFPSRDALG
KNTTKVEIGGELPYDQLIEYLNLINYDQDKYVDQPGEYALRGSIVDFWSYSEKLPCRVEF
DGDFIESIRYFDPESQRSTHKVDFVTLASSCAEDEMTSDIFDYLESPYVFASDYHLTNIG
VDKNTNSADRIDRDDLDEELKYELYDNEIENYSRKKDEENNKVEFRMETLFEKNAFWILE
DHIGIHDERINLGLSEAPHINSNYELLFTSLKRYSAQEFEILVAVENELQKKRLNDLFAE
YDDEVRKYYESGLIKIIELPVKSGFAVKEDRFLLMTDYEIFNKPYRTRLSEAQKKAKRTS
KKSKARDLSSLKIGDYVVHENFGIGQYAGLQTIKIGDVEQESIKILYAEGGVVYVNLNYL
SLVKKYSSGDNAKPNLSALGSGEWKSTKKKSKNKIKEAARQLITIYAKRKMSKGFAFSPD
TIWQKELEASFMYEDTPDQARVTEEVKTDMESEIPMDRLVCGDVGFGKTEIAVRAAFKAV
NDNKQVAVLVPTTILAEQHYNTFRDRLAQFPVRIEVISRFRSAKEQKEIVEKLARGEIDI
IIGTHRLLSKDIRFRNLGLLIIDEEHRFGVMAKEKLRSLRADVDTLTLTATPIPRTLNLS
LLGARDLSIIATPPPNRQPIFTKVDTFDIQKVREWVLTEIKRGGQVYFIHDRVQSIEKIA
AYIKKHIPEIKVGIAHGQLKPAQLEKVIHDFLEKKYDMLISTKIIESGIDIPSVNTIIVN
RADRFGLAELHQLRGRVGRSDRQAYAYFLVPSVNNITKKAFRRLQAIEEYTDLGEGFSLS
MRDLEIRGAGNLLGTEQSGFIDSVGFDLYLKLVDEAVEELKESEFKEIFSDLPKQVERSE
PTIDTYFEIGIPADYMPDQSDRLGFYTALFSMVKIDEAGEIVEEMEDRFGKIPRVVENLI
DVARLRFYASFALWERIVIQKEKVIVILPKGTREEYYKSKFVPILEYINSNFGKKVRFVQ
QKDLLKLEITNNFNNPEDILKFMITFTRKISEMTGVYSPNAEVLN
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggataaacaaatcatagaaaaattaactccgtataataagctgctcgaaccgctaaag
cggaagcaaaaaaaagttttcgtatctcctctggaaggctcatttaaaagtctgttcgtt
caatcgttttatcgcgacgatatgcggatattaatatttgccgcgtcgccccgcgaattg
aaagaattgagcgtcgagctttcactgctaggtttgtccgaacacttgatagcgctcgaa
aattttgaaggcgacgatattcaggaaaaattaacagacatttcgaaacgtaaatccttc
atacttgtttcgacttatgaattgctgaaggtaaaatttccttccagagatgcgctgggc
aaaaacactacaaaagttgaaatcggcggagaacttccttacgatcaacttatcgaatat
ctcaacctgatcaattacgaccaggataaatatgtcgatcagccgggagaatatgcgctg
cgcggttcgatagtcgatttctggtcgtacagcgaaaaattgccctgcagggtcgaattc
gacggagattttattgaatcgatccggtatttcgatccggaatcgcagcgctctactcac
aaagtcgattttgttacgctagcgtcctcctgcgctgaagacgaaatgacatctgatatt
ttcgattacctcgaatcgccgtacgtttttgcgtcggattaccatctgactaatatcggc
gtcgataaaaacactaatagcgccgaccgcatagatagggacgacctcgacgaagaattg
aaatacgaactttatgacaatgaaatcgagaattactcccgtaaaaaagatgaagaaaac
aacaaagttgaattccgcatggaaactcttttcgaaaaaaacgctttttggatacttgaa
gatcacatcggaattcacgacgaaagaataaatctcggtttgagcgaggctccgcatatc
aattcaaattacgaactcctctttacgtccttgaaaagatattccgctcaggaattcgaa
atattggtcgcggtcgaaaacgaactgcagaaaaaacgtctcaatgatttgtttgcggaa
tacgacgatgaagttaggaaatattatgaaagcggattaatcaaaattatcgagttgccg
gtaaaatcgggattcgcagttaaggaagaccggtttctgctgatgacggattatgaaatt
ttcaataaaccatacagaacccgcctttcggaagctcaaaagaaggctaaaagaacttcg
aagaaatcgaaggctcgcgacctttcgagccttaaaatcggcgactacgtcgtgcacgaa
aatttcggcatcggtcaatacgcgggtctgcagacgattaaaataggagatgtggagcag
gaatcgattaagattttatatgcggaaggcggcgttgtatatgtcaatcttaattatctg
tcgcttgtaaaaaagtattcctccggagataatgcaaagccgaatctatcggctctcggc
tcgggcgagtggaaatcgaccaagaaaaaaagtaaaaacaaaatcaaagaagccgctcga
cagctcattactatctatgccaaaagaaaaatgtcgaaaggatttgctttcagtcccgat
acaatttggcaaaaggaacttgaagcttcgtttatgtatgaagacactcccgaccaggcg
cgcgttaccgaagaagtgaaaacggatatggaaagcgaaatcccgatggacagactcgtt
tgcggggatgtcggattcggtaaaacagagattgccgtaagagctgcttttaaagccgta
aacgacaataaacaggtggcggtgcttgttccgactacaattttagcagagcaacattac
aatactttcagggacagacttgctcagtttccggttagaattgaagtcatttcgaggttc
cgttctgcaaaagaacaaaaagagattgtagaaaaactggctcgaggcgaaatagatatt
ataataggaacgcatcggttattgtcgaaggatatccgcttcagaaaccttggacttttg
ataatcgacgaagaacaccgattcggagttatggcaaaagaaaaattaaggtctttgcga
gccgacgtcgatacgttgacgcttacggctacgccgataccgagaactttgaatctctct
ttactgggagcgcgcgacctttcgattattgcaactccgccgcccaacagacagcccatc
tttacaaaagtagacacattcgacatccaaaaggtgagggaatgggtccttactgaaatc
aaaagaggcggacaggtatattttattcacgacagggtgcagtcgatagaaaaaatagcc
gcatatataaagaaacatattccggaaattaaagtaggaattgcgcacggacagttaaaa
cccgctcagctcgaaaaggtgattcacgatttcctcgaaaagaaatacgacatgctgata
tcgacaaagattatcgaatcgggtatcgatattccgagcgtaaatacgataatagtgaac
cgcgctgacaggttcggattggccgagctgcaccagttgcgcggcagagtcggaaggagc
gacaggcaggcatacgcctattttcttgtgccttctgtcaataatataacgaaaaaagcg
ttccgccgtctccaggcaatcgaagaatataccgacctgggagaaggtttcagtttgtcg
atgcgagatctcgaaatcagaggcgcgggcaatttgctcggcaccgaacaaagcggcttt
atcgattctgtcggattcgacctctatctgaaactcgtcgacgaagcggtggaagagttg
aaagaaagcgagttcaaagaaattttcagcgatctgcccaagcaagtcgaacgctccgaa
ccgacaatcgatacttattttgaaatcggcatccccgccgattatatgcccgaccagtcc
gacaggcttggcttttatacggctctgttttccatggttaaaatcgacgaagccggggaa
attgtcgaagaaatggaagaccgtttcggcaaaataccgcgagtcgtggaaaatttaatc
gacgtagcgcgtctccgtttttatgcttcgtttgctttgtgggaaagaatagtaattcag
aaagagaaagtaatagtaattctgcccaagggaaccagggaagaatattacaaaagtaag
ttcgtcccgatactcgaatatatcaattccaatttcggcaaaaaggttcgcttcgttcag
caaaaggatctacttaaactggagataacgaataattttaataatcccgaagacatactt
aaatttatgatcacatttacccgaaaaatatcggagatgaccggagtatacagtcctaat
gcggaggtgctaaattaa
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