Mucilaginibacter robiniae: HH214_11175
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Entry
HH214_11175 CDS
T08554
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mrob
Mucilaginibacter robiniae
Pathway
mrob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HH214_11175 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrob03400
]
HH214_11175 (mfd)
Enzymes [BR:
mrob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH214_11175 (mfd)
DNA repair and recombination proteins [BR:
mrob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HH214_11175 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF5625
Motif
Other DBs
NCBI-ProteinID:
QJD96388
UniProt:
A0A7L5E1K2
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All DBs
Position
2496166..2499516
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AA seq
1116 aa
AA seq
DB search
MNIRDILERYKVDARVLELAQALNKAKSPRIQLRGLVGSSDAAIAVALYFLQHKHQLFVL
PDREEASYFQADLENLTGKEVMLFPSSYRKAFEFTQPDSSNVLARAEVLNELNHATEYGQ
LIVTYPEALAEKVIDRSALEKNTLEIAVNNKLSIDFINEFLIEYDFERVDFVYEPGQFSI
RGGIVDIFSFSHDLPYRVEFFGDFIESIRTFEIESQLSAEQVKNVTIVPNVQSKFLTENN
ISLLEYIDNDTQVWIKDVQFMLDIIQDGHKKATQLWKALPAEDKAQNPDWIDPKFAFTDE
KMIADQLHDFPVIEFGKQFFYQDTYNVNFDIRPQPSFNKDFQLLIHNIKNNEVEKIENFI
FTDSTKQVERLYAIFDDLDKTVKFTPVHVSIREGFVDRQQKVACYTDHQIFDRYYKYKLR
KGYQRTQAITLKELRELKPGDYVTHIDHGIGKYAGLEKVEVNGKMQEMIRLIYADNDLLY
VNINSLNRISKFSGKEGAVPKMNKLGTDTWERLKKTTKKKVKDIARDLIKLYALRKAQHG
NAFSPDSYLQTELEASFIYEDTPDQEKATNDFKRDMELPHPMDRLICGDVGFGKTEVAIR
AAFKAVADSKQVAVLVPTTILAAQHFKTFSDRLKGFPCNIDYVNRFKSSKQIKDTLTKLQ
EGKLDIVIGTHRLVSKDVKFKDLGLMIIDEEQKFGVATKEKLKAMRANVDTLTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVVTELHVFNDKLIKESVEFEIDRGGQIFFIHNRVN
DLAQLGGMIRKLVPKARIGIAHGQLEGDDLEDVMLKFVNHEYDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTTEARKRLSAIEEFSDLG
SGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKDEEFKEVFQDEKP
RPFISFTQIDTDMEILIPDAYVTNLTERYNLYTELSKLENETQLQAFAQQLTDRFGPVPP
QVNDLFNTIRLQWLGKAIGFEKISLKKNVLRGYFLTNQNSPYFESDAFKEVLRFVQTNPR
RVNLKEVKNTLRISIEGVTSIDQAVDLLSEIGLVPA
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
ttgaatattcgtgatatactagaaagatataaggttgatgcgcgcgtgctggaattggct
caggcgctgaataaagccaaaagcccacgcatacagctgcgcggactggtagggtcaagt
gatgctgctattgcggtagctttgtattttttacaacacaaacatcaactttttgtactg
cccgaccgtgaagaagccagctattttcaggctgatttagaaaatttgactggtaaggaa
gtcatgctgtttccatccagctaccggaaggcttttgaattcactcagccggatagcagc
aatgtgctggctcgtgctgaggtactaaacgaactgaaccatgctaccgaatatggccag
ctgattgtaacctatcctgaagccttggccgaaaaggtaatagaccgttcggcgctggaa
aagaatacgcttgaaattgcagttaacaacaagcttagtattgattttatcaacgagttt
ttaattgagtatgattttgaacgggttgattttgtttatgaaccggggcagttttctatt
cgtggtggtattgtagatattttctctttctcgcacgatttaccttaccgcgtagagttt
ttcggcgactttattgaatctatccgcacgttcgagattgaaagccagttatcggccgag
caggtaaaaaatgtaaccatcgttccaaacgtacaatccaagttcctgaccgaaaataat
atttcgctgctggagtacattgataatgacactcaggtttggattaaagatgtgcagttc
atgctggatattattcaagatgggcacaaaaaagctacccagctatggaaagctttacct
gctgaagataaagcacaaaacccggattggattgaccctaaatttgcctttaccgacgaa
aagatgattgccgatcagttgcatgattttcctgtaattgagtttggtaaacagtttttt
taccaggatacgtacaatgtcaattttgatatacggccacagccgtcgtttaataaagat
tttcagttactcattcacaatatcaagaacaacgaagttgagaagattgagaactttatt
tttacggattctaccaagcaggtagaaaggttgtatgctatttttgatgatctggataaa
acggtaaagttcacgccagtgcatgtatccatccgcgaagggtttgttgaccggcagcaa
aaagtagcttgctataccgaccatcagatatttgatcggtattataaatacaagctgcgc
aaaggttaccagcgtacccaagccatcaccttaaaagaactacgcgagcttaagcctggt
gactatgttacgcatattgaccacggcattggcaaatatgccggtttagaaaaggtagag
gtgaatggtaaaatgcaggaaatgatacggctgatttatgctgataatgatttgctgtat
gtaaacattaactcgcttaaccgtatttctaaatttagcggtaaagaaggtgcggtaccc
aaaatgaacaaattaggtaccgacacttgggagcgcctcaagaaaaccacaaaaaaaaaa
gttaaagacattgcccgcgatttgattaagctttacgcattgcgcaaagctcagcatggt
aatgctttttcacccgatagttacttgcaaactgagttggaagcttcgtttatttatgag
gacacgcccgaccaggaaaaagcaacgaatgatttcaagcgcgacatggaattgccacat
ccaatggaccggttgatttgcggtgacgtagggtttggtaaaacggaggtggctattcgg
gctgcttttaaagccgttgccgatagtaagcaggtagcggtattagtacctactaccatt
ttagccgctcagcattttaaaaccttttcggataggttaaaaggttttccgtgcaatatt
gattacgtcaatcgttttaaatcgagcaagcagatcaaggatactttaactaaactgcaa
gaaggcaagctggatattgtaattggtacccaccgcttagtcagcaaagatgtaaagttt
aaagatttaggcttgatgattattgatgaggagcaaaagtttggggtagctacgaaagaa
aaattgaaagctatgcgtgctaatgtagacacgctaacgctgacggctacgcccattcca
cgtacgttgcacttctcgttaatgggtgcacgcgatttatctatcatttctaccccgccg
cctaaccgccagccggtagttaccgagctgcacgtgtttaacgataagctaattaaagaa
tccgtagagtttgagattgaccgcggcggacaaatatttttcattcataaccgcgtaaat
gatttggctcagttaggcggcatgatccgtaagctggtacctaaagctcgtattggtatt
gcacatggtcagctggaaggtgatgacttggaagatgtaatgctcaagtttgtaaaccac
gaatatgatgtgttggtggctactaccattattgaagccggtttggatattccgaatgcc
aataccatcatcattaaccatgcgcacatgtttggcttgagtgatttgcaccagatgcgt
ggtcgtgtaggtcggagcaataaaaaggctttctgttatttactgagtccgccgctatct
accctaactaccgaagcccgtaaacgactaagtgctattgaagaattttcagacctgggt
agtggtttcaatgtagctatgcgcgatttggatattcgcggtagcggtaacctgctgggt
gccgagcaaagcggttttattgctgaaatcggttttgaaatgtaccacaagatattggat
gaagccatacaggagctgaaagacgaagagtttaaagaggtatttcaggatgaaaaacct
cggccatttatcagctttacgcagattgataccgatatggaaatcctgattccggatgcg
tacgtaaccaacctgaccgaacgttacaatctgtacaccgaattatcgaagctggaaaac
gaaacgcagttgcaagctttcgcccagcaacttaccgaccgctttggtcctgtaccgcca
caagtaaatgatttgtttaacaccatacgtttgcagtggttaggcaaggctataggtttt
gaaaaaatatctttgaaaaagaatgtgctgcgtggctactttctaaccaaccagaactcg
ccttactttgaaagtgatgcctttaaagaagtattgcgctttgtacaaaccaaccctcgc
cgggtgaatttaaaagaagtgaaaaataccttacgcattagtatagaaggtgtaactagc
attgaccaggccgtagatttgctgagtgagattggattggtaccagcatag
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