Methylocystis rosea: EHO51_01490
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Entry
EHO51_01490 CDS
T05721
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mros
Methylocystis rosea
Pathway
mros03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EHO51_01490 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mros03400
]
EHO51_01490 (ligD)
Enzymes [BR:
mros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EHO51_01490 (ligD)
DNA repair and recombination proteins [BR:
mros03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EHO51_01490 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AZG75520
UniProt:
A0A3G8M3D0
LinkDB
All DBs
Position
complement(325637..328195)
Genome browser
AA seq
852 aa
AA seq
DB search
MSLADYRRKRDFGATGEPKGRGARKTGSRFVIQKHAARRLHYDLRLEMDGVLKSWAITRG
PSLVPGEKRLAVHVEDHPLDYRDFEGVIPEGQYGAGEVIVWDKGVWIPEGDPHKGYAKGH
LDFELRGEKLGGRWHLVRMARKPREKHDNWLLIKSEDEFARAPEDEDILEEMPRSVDTGR
TIGDVADGKPARRSKKAAAPKQAAAPRSIRTSAVAPTQAPAVDIDPSRLKGAKKAPLPNF
VAPMQASSGAAPASKEWIHEIKFDGYRVQARIEAGRVRLLSRSGLDWTKKFGDEVASALR
ALPLGAALIDGEIVVETSSGASDFSGLQADLSAGRTDRFVYWVFDLLCLDGYDLRGATLL
ERKRLLEALLGAENGDRVRLSLHFEDSGAVVLSHACRLGLEGVVSKLRDSPYRSGRVKSW
IKAKCFARQEFVVAGYTPSTVSRRAIGALVLGVYQNGVLCHVGRVGTGFTADMAQELFTR
LDPMRTSSSPFGARLSTEAARNVRYVRPELVAEVEFRGWTGDQNLRHASFRGLREDKDAR
DVVREKAPPVERATAARVEQSAVRLTHPDRLYWPDQGVTKQGLADYYAEIWRYIAPFIVN
RPLALLRCPNGVEGEKFFQKHAWKGIDPNIVLIDDPKGEEDPLLSIKDLNGLIALVQSGT
LEIHPWGSTASDWERPDVIIMDLDPGEEVAWESVIAAAEETRDRLQDLGLAAFVKTSGGK
GLHVVAPVKPKAEWPEVKAFTKGIADAMTHDSPSKYVATITKSKRRGKILVDYLRNQRGA
TAVAPYSTRARPGAAVSVPLSWDELSPAIGPDYFTIAKTLARLESLQSDPWEGFRQAAAP
IETPKTRKKRKV
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcgccgactaccgcaggaagcgcgattttggggcgacgggcgagccgaagggg
cgaggcgcgcgaaagaccggcagccgcttcgtcatacagaaacatgccgcgaggcggctg
cattacgatcttcgcctagagatggacggcgttctgaaaagctgggccatcaccagaggt
ccaagccttgtgcccggcgaaaagcggcttgctgttcacgtcgaggaccaccctctcgac
tatcgcgacttcgaaggcgtcattccggaaggccaatatggcgccggcgaagtgatcgta
tgggacaagggcgtgtggattcccgaaggcgatccgcacaagggctatgccaagggccac
ctcgatttcgaattgcgcggcgaaaagctcggcggccgttggcatctcgtgcgcatggcg
cgaaaaccgcgcgagaagcacgacaactggcttctcatcaaaagcgaggacgaatttgcg
cgtgcgcctgaagacgaggacatacttgaggagatgccgcgttcggtagacaccgggcgc
acgatcggtgatgtggcagacggcaagccggcgcggcgctcgaaaaaagccgccgcgcca
aagcaggccgccgcgccccggtcaatcaggacaagcgccgtcgcgccaacgcaagcgcct
gcggtggacatcgacccgtcgcgtctcaagggcgcaaagaaggcgccgctgccgaatttc
gttgcgccgatgcaggccagttccggcgccgcgccggcgagtaaggaatggattcacgaa
atcaaattcgacggctatcgcgtgcaggcgcgcatcgaggcgggacgcgtacggttgctc
tcacgcagcggtctcgattggacgaagaaattcggcgatgaggtcgcgtcagcgctgcgc
gccctgcctctcggcgccgcgctcatcgacggcgaaatcgtcgtcgagacgagttcaggc
gcgtcggatttctctgggctgcaggccgatctgagcgcagggcggaccgatcgcttcgtc
tattgggtcttcgatcttctttgcctcgacggatacgatctgcgcggcgcgaccttgctg
gaacgcaaaaggttgctggaagcgctcttgggcgctgagaacggcgacagggttcgtctg
agccttcactttgaggacagtggcgcggtcgtgctgtcgcacgcgtgtcggctcggtctc
gaaggcgtggtgtcgaagctgcgggattcgccctatcgctctggccgcgtgaagagctgg
ataaaggccaaatgcttcgcgcggcaggaattcgtcgtcgcaggctatacgccgtcgacg
gtgtcgcgtcgggcgatcggcgccctcgtgcttggcgtctaccagaatggcgtgctttgc
catgttggccgcgttggcacaggatttacggccgatatggcgcaggagcttttcacgaga
ctcgatcccatgcgcacctcctcgagccctttcggcgcgcgcctcagtacggaggccgcg
cgcaatgtacgctacgtgcggcccgaactggtcgctgaggtggaatttcgcggctggacg
ggcgatcaaaatcttcggcacgcctcctttcgcggtctgcgcgaagataaggacgcgcgc
gacgtcgttcgcgaaaaggcgccgcccgttgagcgggcgacagcggcgagagtggagcaa
agcgccgtgaggctcacccatcccgatcggctctattggccggatcaaggcgtcaccaaa
cagggcctcgccgattactacgccgaaatctggcgctatatcgcgcccttcatcgtcaat
cgcccgctggcgctgctgcgttgccccaacggcgtcgagggagagaagttcttccagaag
catgcctggaagggcatcgatccgaacatcgtgctcatcgacgacccgaaaggcgaagaa
gaccccttgctcagcatcaaggatctcaacggcctgatcgcgctcgttcaatccgggacc
ctggaaattcatccctggggctcgacggcgtcggactgggagcgtcctgacgtcatcatc
atggatctcgatcccggcgaagaggttgcgtgggagtccgtcattgcggcagcggaagaa
acgcgggaccgactccaagaccttgggctcgccgccttcgtgaaaacatccggcggaaag
ggccttcatgtggtggcgcccgtgaagcccaaagcggaatggccagaggtgaaggctttc
accaaaggcatcgccgatgcgatgacacatgacagcccgagcaaatatgttgcaacgatc
acgaaatcgaagcgccgcggaaagatactcgtcgactatctgcgcaatcagcgcggcgcg
acggctgtcgcgccctactccacgcgcgctcgtccgggagccgccgtctcggtcccgctc
tcctgggacgaacttagtccggcgatcggacctgactatttcacgatcgcgaaaaccctc
gcgcgcctcgagtcgctgcagagcgatccgtgggaaggctttcgtcaagcggcggcgccg
atcgaaacgccgaagacgcggaaaaagagaaaagtctag
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