Malassezia restricta: MRET_0044
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Entry
MRET_0044 CDS
T06113
Name
(RefSeq) transcription initiation factor TFIIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
mrt
Malassezia restricta
Pathway
mrt03022
Basal transcription factors
mrt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MRET_0044
09124 Replication and repair
03420 Nucleotide excision repair
MRET_0044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mrt03021
]
MRET_0044
03400 DNA repair and recombination proteins [BR:
mrt03400
]
MRET_0044
Transcription machinery [BR:
mrt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MRET_0044
DNA repair and recombination proteins [BR:
mrt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MRET_0044
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
zf-HIT
RD3
Ribosomal_S27
Motif
Other DBs
NCBI-GeneID:
38736810
NCBI-ProteinID:
XP_027483124
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All DBs
Position
I:complement(join(86743..86959,86986..88259))
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AA seq
496 aa
AA seq
DB search
MRGRDDDYVDSTKLEDDSDEMMEEQSDDSDEFHALPSLPNASLRTALAERSSAKRKNDEG
HGDEFKRTNKSAASRRDRQIQKGNAYSWEATYQRSWDHVQEDESGNLESAVRQIIDINKR
KRSLRDSIPVQRGIIRHFVLILDLSEDMNDRDLRPTRFDLTLQLARQFVTEYFDQNPIGQ
LAIICARDGLAERLSLMGGNTFDHGAVLASRRKLEPRGEPSIQNSLEMARSSLSHLPSSN
TREILYISASLTTVDPGNIYQTIDKLVEEHIQVSVISLAAELRVFKELCTRTGGDFNVVL
NEDHYKELLMKHVPPRVVTETPSTSTEEKKNDLLVMGFPRRIPFHAPPSFCACHGRPMTG
TKGLSFSDRGSAPVGYTCPRCSSRVCQVPTDCPTCGITVIMSTHLARSYHHLFPVQNYEP
VAWEAVTESSPLSCFACAFPFPPRPSDINEASVARTTMDVTLAPSSRYMCPKCHQHFCLE
CDAFVQEHLHTCPGCT
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgggcgcgatgatgattacgtggatagcacaaagctcgaagatgattctgatgag
atgatggaagagcaatcggacgattcagatgagttccacgcccttccgtcactgcctaat
gcgtcgctacgcacggctcttgcagagagatcgagcgccaaacgcaagaatgatgaaggg
catggggatgaatttaaacgtaccaataagtcggcagcttcaagacgtgatcgtcaaatt
cagaaaggaaatgcttacagctgggaggccacatatcagcgttcatgggatcatgtccag
gaagacgaaagcggcaatttggaaagtgctgttcgccaaataatcgacataaacaagcgt
aagaggagcttgcgcgatagcataccggtacaacggggtattatacgtcactttgtttta
attctagatctgagtgaagacatgaatgaccgcgatctacgacccacacgctttgacctt
actttgcagcttgcgcgccaatttgtgactgaatacttcgaccaaaacccgattgggcaa
ctcgctataatctgtgcgcgcgatggcctagctgagcgtctctcacttatgggtggtaac
acattcgaccacggcgctgtcttggccagtcgacgaaaacttgagccgcgtggtgagcca
agtattcagaattcgctggaaatggcgcgaagctcgctttcccacttaccaagctcgaat
acccgtgaaattctatatatatcagcctcactcactactgtggatcccggcaatatatac
caaaccatcgataagttagttgaggagcatatccaggtttctgttatttcacttgccgct
gagcttcgagtctttaaagaactgtgcacacgaacaggaggtgacttcaatgtggttctg
aacgaggatcattacaaggaacttttgatgaagcacgtacctcctcgggtcgtgactgag
actccatccacatcgacagaggaaaagaaaaatgacttgctcgttatgggatttccccgc
cgtatcccctttcatgcacccccttcgttttgcgcgtgtcatggccgtccgatgactgga
acgaaaggtttatcattctcggatagaggctctgctccagttggatatacttgtccgaga
tgctcatcccgtgtatgtcaagtgcccacggattgtccgacgtgtggtattactgtgatt
atgagtactcaccttgcccggagttatcaccacctatttcctgtgcaaaactatgagcca
gtagcttgggaagctgtaactgaatcctcaccgttatcctgtttcgcttgtgcattccca
ttcccaccccgtcccagtgacataaacgaagcgtctgtcgcacgcacaactatggatgta
acattagccccttcatctcgctacatgtgtccgaaatgtcatcagcacttttgtctcgag
tgcgacgcatttgttcaagaacacttgcatacctgtccaggctgtacatga
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