KEGG   Mucilaginibacter rubeus: DEO27_006220
Entry
DEO27_006220      CDS       T06362                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mrub  Mucilaginibacter rubeus
Pathway
mrub03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mrub00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DEO27_006220 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mrub03400]
    DEO27_006220 (ligD)
Enzymes [BR:mrub01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DEO27_006220 (ligD)
DNA repair and recombination proteins [BR:mrub03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DEO27_006220 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_primase_S
Other DBs
NCBI-ProteinID: QEM09633
UniProt: A0A5C1HW09
LinkDB
Position
1517746..1520472
AA seq 908 aa
MSLEKYVEKRDFSKTKEPKAGRSKDKDHLMFVIQKHDASRLHYDFRLEMDGVLKSWAIPK
GPSTDPKVKRLAMMVEDHPFDYRNFEGIIPQGEYGGGTVIVWDEGTYEPIDKIKGKKAQE
KYLLKQLEAGSVKIKLHGEKLEGEFALVKTHGMGENGWLLIKHNDEFASAKDITKKDKSI
LSGKTITSMEKTSEKVWQHGHEEDLEKPQKPVKKKAPNEPVEKLESKVDTNDTETFDVEA
LLKKAPKSKAPTNIKPMKATLVDEPFDDTDWLYEVKWDGYRAIAVIDKKGAELISRNNLP
FDKYYPINKLLKEWQINAVIDGEILVLNDKGISDFGALQNWRSEADGNLVYYVFDILWYE
GKNLMGLPLKQRQAILSAILPTNNDQIRQSKSFDTGGIEFFNAAERIGLEGIIAKKASSV
YTSDLRSKEWLKIKVHRRQEVIVAGFTKNAGTSKSFSALILALYDDKGKLQYVGKVGTGF
SDKLQKEMMAEFKPLITAKSPFEVEPDVDKPSRFRPQRMGAKPTWLKPELVCEVAFAEVT
SDGVFRQASFKGMRTDKKAKDVVLETPKHTAETVEETASEDKDEHAKAIKPVENTDRKTL
LNPKDETQVRKICGHELKFTHLSKVYWPEDGVTKRDMFNYYYQVADYILPYLKDRPMSLN
RFPDGIHGPSFYQKDIKGKAPDWMTKTFPYTNGEGEHKEYLVGSDESYLLWMASLGCIEM
NPWFSRVKSPDNPDYCVIDLDPDKNTFDQVIEAALEVKKVLDAIDVPSCCKTSGSTGMHI
YIPLGAKYDYDQSQMFARLVVGIVHKRIPDYTSLERMVAKRNGKMYLDFLQNRPGATIAG
PYSLRPKPGATVSMPLHWDEVKPGLTMKDFTIFNSVDRLKETGDLFKGVLAKGIDLEKTI
KKAKSVFE
NT seq 2727 nt   +upstreamnt  +downstreamnt
atgagcctggaaaagtatgtagaaaaacgcgatttcagcaaaaccaaagagcctaaagct
ggcagaagcaaggataaggatcacctgatgttcgtgatccagaaacatgatgcttcacgc
ttacattacgatttcaggcttgaaatggatggtgtgcttaaaagctgggccatcccgaaa
ggcccgtcaaccgatcctaaagtcaagcgtttggccatgatggttgaggatcatcctttt
gattaccgaaactttgaaggtattattccgcagggcgaatatggcggcggtaccgtgatt
gtttgggatgaaggtacttatgaacctattgataagatcaagggcaaaaaggcgcaggaa
aaatatctgcttaagcaactcgaagcaggctcggtaaaaattaaacttcatggcgaaaag
ctggagggagagtttgctttagtaaaaacccacggtatgggcgaaaacggctggttgctt
atcaagcataatgatgaatttgcttcggcaaaagatattacaaaaaaagataaatctatc
ctctccggcaaaaccattacaagcatggagaaaaccagcgaaaaggtttggcagcatggc
cacgaagaagatttagagaaacctcaaaaaccggttaaaaaaaaagccccgaacgaaccg
gttgagaaactggaaagtaaggttgatactaacgataccgaaacctttgatgttgaggca
ttattgaaaaaagccccaaaatcaaaagcgccaaccaatatcaaacccatgaaggccact
ttagttgatgagccttttgatgacaccgactggctttacgaagttaaatgggatggctac
agggccatcgccgttatcgataaaaaaggagcagagcttatttcccgcaataaccttcct
tttgataaatattatcccatcaataagctgctaaaagaatggcagatcaatgcggtgatt
gatggcgagatcctggtgttgaacgataaaggcatttctgattttggcgcattgcaaaac
tggcggagcgaagccgatggtaatctggtttattatgtattcgatatcctttggtatgaa
ggtaaaaacctcatgggcttgccactgaaacagcgccaggctattttaagtgcgattttg
ccaaccaataatgaccagatcaggcagagcaagtcatttgataccggcggcatagagttt
tttaacgccgccgagcgtatcggcttagaggggataatcgcaaaaaaagcaagcagtgtt
tatacgtctgatcttcgctcaaaagagtggcttaaaataaaagtgcaccgcaggcaggaa
gtgattgttgccgggtttactaaaaacgccggcacttcaaaatcattcagcgcgttgata
ttggctttgtatgatgataagggcaaactacaatatgtaggtaaagtaggcaccggtttt
tcggataaactgcagaaggaaatgatggcggaattcaagccgctgattacagctaaaagc
ccatttgaggtagagccagatgtagataagccatcccgcttcaggccgcagcggatgggg
gcaaagccaacctggcttaaacccgagcttgtttgtgaagttgcctttgccgaggtaaca
agcgacggggtattcaggcaggcatcttttaaagggatgcgcaccgataaaaaggcgaaa
gatgtggtgctggaaacgcctaaacataccgctgaaaccgtagaggaaaccgcgagcgag
gataaagatgaacacgctaaagctattaaacccgtggaaaatacagatcgtaaaacactg
ctgaaccctaaggatgaaacgcaggtgcgcaaaatttgcgggcatgagctcaagtttact
cacctgagtaaagtttactggcccgaagatggtgtaaccaagcgggatatgttcaattac
tattaccaggttgcggattatatattgccatatttgaaagataggccgatgtcgctcaac
aggttcccggatgggattcatgggccaagcttttatcaaaaggatataaaaggtaaagct
ccggattggatgaccaaaacattcccatataccaatggggaaggggaacacaaagaatac
ctggtaggttctgatgaatcctatttgctgtggatggcctcattgggatgtattgagatg
aatccctggtttagccgggtaaaatcgccggataaccctgactattgtgtgatagacctt
gatccggataaaaatacattcgaccaggttattgaggctgctctggaagttaaaaaagta
ttggatgctatcgacgtgccatcgtgctgtaaaacatcgggctcaacggggatgcatatt
tatattccgttaggggccaagtatgattatgatcagtcacaaatgtttgcccgactggtt
gttggtattgtgcacaaacgaattcctgattacaccagcctggaacgcatggtagccaag
cgaaatggtaaaatgtacctcgattttctgcaaaaccgcccaggagctaccattgccggt
ccgtattcattaaggcctaaaccgggtgcaacggtttccatgcccttgcattgggatgaa
gtaaaaccaggcctcaccatgaaggattttaccatttttaattccgtcgaccgcctgaag
gaaaccggtgacctgtttaaaggtgtgctggcgaaaggcatcgacctggagaaaacaatt
aagaaagcgaagagcgtgtttgaatag

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