Mucilaginibacter rubeus: DEO27_006220
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Entry
DEO27_006220 CDS
T06362
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mrub
Mucilaginibacter rubeus
Pathway
mrub03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mrub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DEO27_006220 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrub03400
]
DEO27_006220 (ligD)
Enzymes [BR:
mrub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DEO27_006220 (ligD)
DNA repair and recombination proteins [BR:
mrub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DEO27_006220 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QEM09633
UniProt:
A0A5C1HW09
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All DBs
Position
1517746..1520472
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AA seq
908 aa
AA seq
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MSLEKYVEKRDFSKTKEPKAGRSKDKDHLMFVIQKHDASRLHYDFRLEMDGVLKSWAIPK
GPSTDPKVKRLAMMVEDHPFDYRNFEGIIPQGEYGGGTVIVWDEGTYEPIDKIKGKKAQE
KYLLKQLEAGSVKIKLHGEKLEGEFALVKTHGMGENGWLLIKHNDEFASAKDITKKDKSI
LSGKTITSMEKTSEKVWQHGHEEDLEKPQKPVKKKAPNEPVEKLESKVDTNDTETFDVEA
LLKKAPKSKAPTNIKPMKATLVDEPFDDTDWLYEVKWDGYRAIAVIDKKGAELISRNNLP
FDKYYPINKLLKEWQINAVIDGEILVLNDKGISDFGALQNWRSEADGNLVYYVFDILWYE
GKNLMGLPLKQRQAILSAILPTNNDQIRQSKSFDTGGIEFFNAAERIGLEGIIAKKASSV
YTSDLRSKEWLKIKVHRRQEVIVAGFTKNAGTSKSFSALILALYDDKGKLQYVGKVGTGF
SDKLQKEMMAEFKPLITAKSPFEVEPDVDKPSRFRPQRMGAKPTWLKPELVCEVAFAEVT
SDGVFRQASFKGMRTDKKAKDVVLETPKHTAETVEETASEDKDEHAKAIKPVENTDRKTL
LNPKDETQVRKICGHELKFTHLSKVYWPEDGVTKRDMFNYYYQVADYILPYLKDRPMSLN
RFPDGIHGPSFYQKDIKGKAPDWMTKTFPYTNGEGEHKEYLVGSDESYLLWMASLGCIEM
NPWFSRVKSPDNPDYCVIDLDPDKNTFDQVIEAALEVKKVLDAIDVPSCCKTSGSTGMHI
YIPLGAKYDYDQSQMFARLVVGIVHKRIPDYTSLERMVAKRNGKMYLDFLQNRPGATIAG
PYSLRPKPGATVSMPLHWDEVKPGLTMKDFTIFNSVDRLKETGDLFKGVLAKGIDLEKTI
KKAKSVFE
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggaaaagtatgtagaaaaacgcgatttcagcaaaaccaaagagcctaaagct
ggcagaagcaaggataaggatcacctgatgttcgtgatccagaaacatgatgcttcacgc
ttacattacgatttcaggcttgaaatggatggtgtgcttaaaagctgggccatcccgaaa
ggcccgtcaaccgatcctaaagtcaagcgtttggccatgatggttgaggatcatcctttt
gattaccgaaactttgaaggtattattccgcagggcgaatatggcggcggtaccgtgatt
gtttgggatgaaggtacttatgaacctattgataagatcaagggcaaaaaggcgcaggaa
aaatatctgcttaagcaactcgaagcaggctcggtaaaaattaaacttcatggcgaaaag
ctggagggagagtttgctttagtaaaaacccacggtatgggcgaaaacggctggttgctt
atcaagcataatgatgaatttgcttcggcaaaagatattacaaaaaaagataaatctatc
ctctccggcaaaaccattacaagcatggagaaaaccagcgaaaaggtttggcagcatggc
cacgaagaagatttagagaaacctcaaaaaccggttaaaaaaaaagccccgaacgaaccg
gttgagaaactggaaagtaaggttgatactaacgataccgaaacctttgatgttgaggca
ttattgaaaaaagccccaaaatcaaaagcgccaaccaatatcaaacccatgaaggccact
ttagttgatgagccttttgatgacaccgactggctttacgaagttaaatgggatggctac
agggccatcgccgttatcgataaaaaaggagcagagcttatttcccgcaataaccttcct
tttgataaatattatcccatcaataagctgctaaaagaatggcagatcaatgcggtgatt
gatggcgagatcctggtgttgaacgataaaggcatttctgattttggcgcattgcaaaac
tggcggagcgaagccgatggtaatctggtttattatgtattcgatatcctttggtatgaa
ggtaaaaacctcatgggcttgccactgaaacagcgccaggctattttaagtgcgattttg
ccaaccaataatgaccagatcaggcagagcaagtcatttgataccggcggcatagagttt
tttaacgccgccgagcgtatcggcttagaggggataatcgcaaaaaaagcaagcagtgtt
tatacgtctgatcttcgctcaaaagagtggcttaaaataaaagtgcaccgcaggcaggaa
gtgattgttgccgggtttactaaaaacgccggcacttcaaaatcattcagcgcgttgata
ttggctttgtatgatgataagggcaaactacaatatgtaggtaaagtaggcaccggtttt
tcggataaactgcagaaggaaatgatggcggaattcaagccgctgattacagctaaaagc
ccatttgaggtagagccagatgtagataagccatcccgcttcaggccgcagcggatgggg
gcaaagccaacctggcttaaacccgagcttgtttgtgaagttgcctttgccgaggtaaca
agcgacggggtattcaggcaggcatcttttaaagggatgcgcaccgataaaaaggcgaaa
gatgtggtgctggaaacgcctaaacataccgctgaaaccgtagaggaaaccgcgagcgag
gataaagatgaacacgctaaagctattaaacccgtggaaaatacagatcgtaaaacactg
ctgaaccctaaggatgaaacgcaggtgcgcaaaatttgcgggcatgagctcaagtttact
cacctgagtaaagtttactggcccgaagatggtgtaaccaagcgggatatgttcaattac
tattaccaggttgcggattatatattgccatatttgaaagataggccgatgtcgctcaac
aggttcccggatgggattcatgggccaagcttttatcaaaaggatataaaaggtaaagct
ccggattggatgaccaaaacattcccatataccaatggggaaggggaacacaaagaatac
ctggtaggttctgatgaatcctatttgctgtggatggcctcattgggatgtattgagatg
aatccctggtttagccgggtaaaatcgccggataaccctgactattgtgtgatagacctt
gatccggataaaaatacattcgaccaggttattgaggctgctctggaagttaaaaaagta
ttggatgctatcgacgtgccatcgtgctgtaaaacatcgggctcaacggggatgcatatt
tatattccgttaggggccaagtatgattatgatcagtcacaaatgtttgcccgactggtt
gttggtattgtgcacaaacgaattcctgattacaccagcctggaacgcatggtagccaag
cgaaatggtaaaatgtacctcgattttctgcaaaaccgcccaggagctaccattgccggt
ccgtattcattaaggcctaaaccgggtgcaacggtttccatgcccttgcattgggatgaa
gtaaaaccaggcctcaccatgaaggattttaccatttttaattccgtcgaccgcctgaag
gaaaccggtgacctgtttaaaggtgtgctggcgaaaggcatcgacctggagaaaacaatt
aagaaagcgaagagcgtgtttgaatag
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