Mucilaginibacter rubeus: DEO27_019150
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Entry
DEO27_019150 CDS
T06362
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mrub
Mucilaginibacter rubeus
Pathway
mrub03030
DNA replication
mrub03410
Base excision repair
mrub03420
Nucleotide excision repair
mrub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mrub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DEO27_019150 (ligA)
03410 Base excision repair
DEO27_019150 (ligA)
03420 Nucleotide excision repair
DEO27_019150 (ligA)
03430 Mismatch repair
DEO27_019150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mrub03032
]
DEO27_019150 (ligA)
03400 DNA repair and recombination proteins [BR:
mrub03400
]
DEO27_019150 (ligA)
Enzymes [BR:
mrub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DEO27_019150 (ligA)
DNA replication proteins [BR:
mrub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DEO27_019150 (ligA)
DNA repair and recombination proteins [BR:
mrub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DEO27_019150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DEO27_019150 (ligA)
MMR (mismatch excision repair)
DNA ligase
DEO27_019150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DEO27_019150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
Dna2
Auto_anti-p27
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QEM12055
UniProt:
A0A5C1I299
LinkDB
All DBs
Position
complement(4870347..4872362)
Genome browser
AA seq
671 aa
AA seq
DB search
MSSAEAKKQIEALTAELKQHNYNYYVLAMPTISDFDFDKKLEQLNKLEKEYPEFADPDSP
TQRVGGDITKEFVTVRHRWPMLSLGNTYNEQELLDFDQRIRKAIGDNFEYVCELKFDGLS
MSLTYEDGKLVRGVTRGDGVQGDEVTTNIKTIHTIPKRLHEGEGYPAYFDIRGEVFMHRK
AFDRLNNERIENGEVPYANPRNFASGTVKMQDSAEVAKRPLDCFLYFLYTEKPLFKTHWE
SLQAVKTWGFHTNEHSELCPDINCVMEFINKWDKERFNLSYDIDGIVIKVNNYSQQQELG
FTAKSPRWAISYKFKAERVETELLEVSYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNA
NEIIRLDLHEGDTVFVEKGGEIIPKIISVNPEKRKADAVPVIYRTTCPACDTPLERKEGE
AAFYCPNDEGCPPQIVGKMQHFIGRKAMNIDGLGDETIETLYNKGFISHISDIYELHTHA
AELKQMGRFGEKSINNMLEGIEASKKMPFEKVLFGLGIRYVGETVARKLAFHFKSIDKLM
AASVEELTAAEEIGERIAQSITEYFAGDIHRQEIQKLREQGLQFIAEEKEVVLASEKLAG
MNFIISGTFEKFSRDELKDIIEQNGGKILSSISAKLNYLVAGDNMGPAKLEKANKLNIPI
IGDDELIALIN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagctgaagcaaagaaacaaatagaggcattaacagccgaacttaaacagcac
aattacaactactatgtgctggctatgccaaccatttctgattttgattttgataaaaaa
ctggagcagcttaacaagctcgaaaaggaatacccggaatttgccgacccggattcgcca
acacaaagggtaggcggggatattaccaaggagtttgtaacggttaggcaccgatggcca
atgctgtcgttaggtaatacttacaatgagcaggaactgcttgattttgatcagcgtatc
cgtaaagccattggcgataattttgagtatgtatgcgagcttaagtttgacggcctgagt
atgagccttacctatgaggacggcaaactggtacgcggtgttacccgtggcgatggcgta
cagggcgatgaggtaaccactaatattaaaactatccataccataccaaagcgtttacac
gaaggtgaaggctatcctgcttactttgatattcgtggtgaggtgtttatgcaccgtaaa
gcttttgacaggcttaataacgaacgcattgaaaacggagaagtgccttatgccaatccc
cgtaattttgcttcgggtaccgtaaaaatgcaggactcggccgaggtagctaaacgcccg
cttgattgcttcctgtactttctgtataccgaaaaaccattatttaaaacccattgggaa
agcctgcaggctgttaaaacctggggtttccataccaatgagcatagcgagctttgcccg
gatattaattgcgtaatggagtttattaataaatgggataaggagcgctttaatctgagc
tatgatattgatggcattgttattaaagtaaataactactcgcagcagcaggagcttggc
tttaccgccaaatcgccacgctgggctatctcctataagtttaaagccgaaagggtggag
accgaactgcttgaggtaagctaccaggttggccgtacaggtgccgttaccccggttgcc
aatttaaagcctgtgctgcttgccggtactacggtaaagcgtgctacgctgcataatgcc
aatgaaattatccgtttggatttacatgagggcgatactgtttttgttgaaaaaggcggc
gagatcattcctaagatcatcagcgtaaatcccgaaaagcggaaagccgatgccgttcct
gttatttaccgtactacctgccctgcttgcgataccccgcttgaacgtaaagaaggtgaa
gccgcgttttattgccctaacgatgaaggttgcccaccgcagattgttggcaaaatgcag
catttcatcgggcgtaaggctatgaatattgatggtttgggcgatgaaactatcgaaacc
ctgtataataaaggatttattagtcatatcagcgatatctatgaactgcatacccatgcc
gccgagttaaagcagatgggccgctttggcgaaaaatctatcaataacatgctggagggt
atcgaggcatctaaaaaaatgcctttcgaaaaagtgttgtttggtttagggatccgctat
gtgggtgaaacggtagcccgtaagctggcgttccattttaagtcgattgataagttgatg
gcagcatcggttgaagaactgactgctgccgaagaaataggcgaacgcatagcccaaagt
atcaccgaatattttgcaggtgatatccatcgccaggaaatacaaaagcttagggagcag
ggcctgcagtttatagccgaagaaaaagaagtggtactggccagcgaaaagctcgccggg
atgaacttcattatctcgggaacgttcgaaaaattttcgcgcgatgagctgaaagatatc
attgagcaaaatggtgggaagattttgagcagcatttcggctaaacttaattaccttgtt
gccggcgacaatatgggacctgcaaagctcgaaaaagccaataaacttaacatccccatt
attggcgatgatgaattaattgcgttaataaattaa
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