Mucilaginibacter rubeus: DEO27_025045
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Entry
DEO27_025045 CDS
T06362
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mrub
Mucilaginibacter rubeus
Pathway
mrub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mrub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DEO27_025045 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mrub03400
]
DEO27_025045 (mfd)
Enzymes [BR:
mrub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DEO27_025045 (mfd)
DNA repair and recombination proteins [BR:
mrub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DEO27_025045 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QEM13138
UniProt:
A0A5C1I6L0
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All DBs
Position
complement(6241549..6244896)
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AA seq
1115 aa
AA seq
DB search
MNIRDILDRYKADDRIKALATALNASKNPRVQLRGLVGSSDSAMAVALYFLQHKHMVFVL
PDREEAGYFQADLENLTGKEALLFPSSYRKPFEFTQPDSSNVLARAEVLNELNHSTEYGQ
LIVTYPEALAEKVIDRSSLEKNTLEIAVENKLSIDFINEFLIEYDFERVDFVYEPGQFSI
RGGIVDIFSFSHMLPYRVEFFGDYIESIRTFEIESQLSAERVKSITIVPNVQSKFLTENN
ISLLEYVEPGTQVWIKDVQFTLDIIQTGYKKAVNLWKALSADEKAQNPEWIDPKFGFTDE
KLIADQLHDFPVVEFGKQFFYHDAIVVNFDMRPQPSFNKDFTLLIHNFKNNEAEKIENFI
LTDSAKQVERLYAILDDLDKTVKFTPISISVREGFIDQEQKLACYTDHQIFDRYYKYKTR
KGYQRSQAITLKELRDLKPGDYVTHIDHGIGKYAGLEKVDVNGKQQEMIRLIYADNDLLY
VNINSLNRISKFSGKEGSVPKMNKLGTDTWERLKKTTKKKVKDIARDLIKLYALRKAQHG
NAFSPDSYLQTELEASFLYEDTPDQEKATADFKKDMESPHPMDRLICGDVGFGKTEVAVR
AAFKAVADSKQVAILVPTTILAAQHYKTFTDRLKGFPANIDYVNRFKSTRQIKDTLEKLK
EGKVDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVSTKEKLKQMRANVDTLTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVVTELHVFNDKLIKEAVEFEIDRGGQIFFIHNRVA
DLPQLGGMIRKLVPKARIGIAHGQLEGDDLEDVMLKFVNHEYDVLVATTIIEAGLDIPNA
NTIIINYAHMFGLSDLHQMRGRVGRSNKKAYCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKDDEFKEVFPEDKP
RPYISFTQIDTDLEILIPDEYVTNLSERYNLYTELSKLENEVELNAFRQKLHDRFGPVPP
QVDSLLNTMRLQWLGKAIGFEKISLKKNVLRGYFITNQQSSYFETEAFRNVLDFVKNNPR
RTNLKEVKNTLRLGIEGIDSVDEAVRMLSEVAGIA
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
ttgaatatccgtgatatattagacagatacaaagctgatgaccggatcaaagcgttagct
accgcgcttaacgcgtcaaaaaatccgagagtgcagttacgtggtttggtgggatcaagc
gattcggccatggcggtagcattgtattttctgcagcataaacacatggtgtttgtactg
cccgaccgtgaagaagcgggttattttcaggccgacctggaaaaccttaccggtaaagaa
gctttattatttccttcatcgtaccgtaagccatttgaatttacccagccagatagcagt
aatgtgcttgcacgtgccgaggttttgaatgagcttaaccatagtacagagtacggccag
ctgattgttacctatcccgaagccctggccgaaaaggtgatagatcgttcctcgctcgaa
aaaaacacacttgaaatagctgttgaaaataaactcagcatcgattttatcaatgaattt
ttaatagagtacgattttgagcgggttgattttgtgtatgagccggggcaattctccatt
cgcggtggtatcgttgatatcttctcgttttcgcacatgctcccttacagggtagagttc
ttcggcgattacatcgaatccatccgtacgtttgagatcgaaagccagctatcggcagag
cgggttaaaagcattaccattgtacctaatgtacaatctaagtttttaaccgaaaataat
atctccctgttggaatatgttgagcctggtacgcaggtgtggataaaagatgttcagttt
acgctggatattatccaaaccgggtacaaaaaagcggtaaacctgtggaaggctttatct
gccgatgagaaagctcaaaacccggaatggattgaccctaagtttggcttcaccgacgaa
aagctgattgccgatcaattacatgattttccggtggtggagtttggtaagcagttcttt
tatcatgatgctatcgttgtcaattttgatatgcggccgcagccatcgttcaataaagac
tttacgctgctcatccacaactttaaaaacaacgaggccgaaaagattgagaatttcatc
ctgaccgattcggccaagcaggttgagcgtttatatgcaattttagatgatctggataaa
acggtaaaatttacgcccataagtatttcggtacgcgaaggttttatcgaccaggaacaa
aaactggcctgctataccgatcaccagatttttgaccgttactataaatacaaaacccgg
aagggctatcagcgttcacaagctatcacccttaaagaacttcgtgaccttaaacccggc
gattacgttacccatatagatcatggcataggcaaatatgccggattggaaaaggttgat
gtaaacggcaagcaacaggaaatgatcaggctcatttatgccgataacgacctgctgtat
gtgaacatcaactcgcttaaccgcatttctaaattcagcggcaaagagggctctgttccc
aaaatgaataagctggggactgatacctgggaacgtcttaagaaaacaacaaaaaaaaaa
gttaaggacatagcccgagatctgatcaagctttacgccctccgtaaagcccagcacggt
aatgccttttcgcccgatagttatctgcaaaccgaattggaagcatcgttcctttacgag
gatacgcccgatcaggaaaaggccactgccgatttcaaaaaagacatggaatcgccacac
cctatggatcgcctcatttgtggcgacgtaggctttggtaaaaccgaagtggctgttcgt
gctgcatttaaagctgttgctgatagcaagcaggtggccatactggtacctacaactatc
ctcgcggcacagcattataaaacttttaccgacaggctcaagggcttccctgctaacatt
gattatgttaaccgttttaagtcaaccaggcagatcaaggataccttagagaaactgaag
gaaggcaaggttgacatcatcataggcacccatcgtttggtaagtaaggatgtgaagttt
aaagaccttggcctcatgatcattgacgaggagcagaagtttggcgtatcaaccaaagaa
aagctgaaacagatgcgcgccaatgtggacacacttacgttaactgcaacgcctatccca
cgtacgctgcacttttcgttaatgggtgcacgtgacctttctatcatatcaacgccgccg
ccaaaccgtcagccggttgttaccgagttgcacgtgtttaatgataagctcattaaggaa
gcagtagaatttgaaatagaccgtggcggacagatcttctttattcataaccgtgtggcc
gatctgccgcaattgggagggatgatccgcaaattggtccctaaggcccgtattggtata
gcgcacgggcaactggaaggtgacgatctggaagacgtgatgttgaagtttgtgaaccac
gagtatgatgtattggttgccacaacaattattgaggccgggttggatattcctaatgcc
aataccatcatcatcaactacgcccacatgtttggcctgagcgatttgcaccagatgcgt
ggccgtgtagggaggagcaataaaaaagcatattgttatctgttaagtccgccattgtca
acacttaccagcgaggcccgtaaacgtcttagcgccattgaagagttcagcgacctgggc
agtggtttcaacgtagccatgcgagatttggatatccgcggaagcggtaacctgcttggc
gccgagcaaagtggtttcattgccgaaataggctttgaaatgtaccacaagatattggac
gaggctattcaggagttgaaggatgatgaatttaaagaggtattccctgaagataaacct
cggccatacatttctttcacccagatagataccgacctggagatcctgatccctgatgaa
tatgtgactaatctctctgaacgatataacctgtataccgagctttctaaactggaaaac
gaagttgagctaaacgctttcaggcaaaaactgcacgaccggtttggccctgttccgccg
caggttgacagtttgctgaacaccatgcgtttgcaatggctgggcaaggctattggattt
gaaaaaatctcgcttaagaaaaacgtgttgaggggttactttatcaccaaccaacaatca
agctattttgaaacggaggctttccgcaatgtgctcgattttgtaaaaaataatccaagg
cgtactaatttaaaagaggttaagaacacgcttcgtttgggcattgagggtattgatagt
gttgatgaggcggtgaggatgctgagtgaagtggcggggatagcgtaa
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