Mycobacterium sp. JS623: Mycsm_05316
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Entry
Mycsm_05316 CDS
T02423
Name
(GenBank) DNA ligase D/DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msa
Mycobacterium sp. JS623
Pathway
msa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mycsm_05316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msa03400
]
Mycsm_05316
Enzymes [BR:
msa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mycsm_05316
DNA repair and recombination proteins [BR:
msa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mycsm_05316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Thr_synth_N
Stealth_CR3
Big_4
Motif
Other DBs
NCBI-ProteinID:
AGB25514
UniProt:
L0J2H8
LinkDB
All DBs
Position
complement(5274419..5276704)
Genome browser
AA seq
761 aa
AA seq
DB search
MVDRFGRVRLTNPDKVLYPATGTTKAEVFDYYVNIAEVMIPHIAGRAVTRKRWPNGVDEA
SFFEKQLASSAPEWLDRASITHKSGTTTYPLIDTVEGVAWLAQQASLEVHVPQWRFVVGG
QDGRANEQGPATRIVFDLDPGAGVSFRQLCTVAHEVRDLLTDIGLTTFPLTSGSKGLHLY
VPLEEPISSHGASVLARRVAQQLEKTMPKQVTATMTKSLRTGKVFLDWSQNNAAKTTIAP
YSLRGREHPTVAAPRTWDEIADPKLRHLRFDEVLERVDRDGDLLADLDESVPLTDQLTKY
RSMRDASKTPEPVPKTPPKAGDNNLFVIQEHHARRLHYDLRLERNGVLVSWAVPKNLPDT
PAVNHLAVHTEDHPLEYLTFHGTIPKGEYGAGQMIVWDTGTYETEKFNDVPPDGPAKGGE
VIVTLHGKKIEGRYALIQTDGKNWLAHRMKEQQQPQAGDLAPMLATEGSVENLKSSQWAF
EGKWDGYRVIVEANRGRLSARSRRGRDVTGEYPQFEALAADLADHHVILDGEAVALDDKG
VPSFSEMQNRARSTRVEFWAFDILQLDGRSLLRAKYSDRRRLLEALAEGGGIIVPDTLPG
DGTEAMEHARKHRWEGVIAKKRDSTYQPGRRSSSWIKDKIWCTQEVVIGGWRQGEGGRSS
GIGALMLGIPEDGGLHFAGRVGTGFTEKELTKLKGILKPLHTDESPFNTRLPTQDAKNVT
FVRPELVGEVRYSERTSDGRLRQPSWRGLRPDKVPDEVRWE
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
gtggtggatcgattcggccgggtcaggctcaccaacccggacaaggtgctgtacccggcg
acggggaccaccaaggccgaggtcttcgactactacgtcaacatcgccgaagtgatgatc
ccgcacatcgcggggcgcgccgtcacccgcaagcgctggcccaacggcgtcgacgaggca
tcgttcttcgaaaagcagctcgcgtcgtcggcccccgagtggctcgaccgcgccagcatc
acacacaaatccggcactaccacctatccgctcatcgacaccgtcgagggcgtcgcgtgg
ctggcccaacaggcctcgctggaagtgcatgtcccgcagtggcgattcgtcgtgggcggg
caggacgggcgggcgaacgagcaggggcccgccactcgaatcgtattcgacctcgatccg
ggcgcgggggtgagttttcgtcagttgtgcacggtggcccacgaagtccgtgatctgctc
accgacatcgggctcacgactttcccgctgaccagcggtagcaagggtctgcacctttat
gtgccgctcgaggagccgatcagctcgcacggcgcatcggtgttggctcgtcgagtggcc
cagcagctggaaaagaccatgcccaaacaggttacggcgaccatgaccaagagcctgcgc
acaggcaaggtctttctcgactggagccagaacaacgctgcaaaaacaaccatcgcgccg
tattcgcttcgtggacgtgaacatccgacggtggcagcgccacgcacctgggatgaaatt
gccgaccccaaactgcgacatctgcgtttcgatgaggtgctggagcgggtcgacagggac
ggcgacctgctggccgatctcgacgagagcgtgccgctgaccgatcagctgaccaaatac
cgcagcatgcgcgacgcgtcgaaaaccccggagccggttccgaaaacaccgccaaaggcg
ggtgataacaacctattcgtaatccaggagcaccacgcccgcaggcttcactatgacctg
cgcctggagcgaaacggtgttctggtgagctgggcagtgcccaagaatttgcccgacact
cctgcggtgaatcaccttgccgtgcacaccgaggaccatccgctggagtacttgacattc
cacggcaccatcccgaagggggagtacggcgcgggccagatgatcgtctgggacaccggg
acatacgagaccgagaagttcaacgacgtacccccggacggccccgccaagggtggggaa
gtgatcgtcacgttgcacggcaagaagatcgagggccgttacgcgctgatccagaccgac
ggcaagaactggctggcgcaccggatgaaggaacagcagcagccacaagcaggcgatctc
gcgccgatgctggcgacggaagggtccgtcgagaatctcaagtcgtcgcaatgggcgttc
gaaggtaaatgggatggctatcgcgtcatcgtcgaagcgaaccgcgggcggctcagcgcg
cgctcccgacgcggccgcgacgtcactggtgaatatccgcaattcgaagcgcttgcagcc
gatctcgccgaccatcacgtgatcctcgacggtgaagccgtagcgctcgatgacaagggc
gtgccgagtttcagcgagatgcagaaccgagcacggtccacgcgcgtcgagttttgggcg
ttcgacatcctgcagctcgatggccgatcgttgttgcgcgccaagtactcagaccgtcgc
cggctgctcgaagcgttggccgagggcggcgggatcatcgtgcccgacacgctgcccggt
gacggcaccgaagcaatggagcacgcccgcaaacaccgctgggaaggtgtgatcgcaaag
aagcgcgactccacgtaccaacccggccgacgctcgtcgtcgtggatcaaggacaagatc
tggtgcacgcaggaagtggtgatcggtggctggcggcaaggcgagggtggccgctccagc
ggtatcggcgcactgatgctgggcattcccgaagacggcgggctgcatttcgccggccgg
gtcggcaccgggttcaccgaaaaggaactgaccaagctcaagggcatcctcaaaccgctg
cacaccgacgaatcgccgttcaacacacggcttcccactcaggacgccaagaacgtcacg
ttcgtccgacccgaactggtcggcgaggtgcgttacagcgaacgcacctcggatggccgg
ctgcgtcagccgagttggcgcgggctgcgcccggataaagtccctgacgaagtgcgctgg
gaatga
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