Mucilaginibacter sabulilitoris: SNE25_02480
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Entry
SNE25_02480 CDS
T09599
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msab
Mucilaginibacter sabulilitoris
Pathway
msab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SNE25_02480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msab03400
]
SNE25_02480 (mfd)
Enzymes [BR:
msab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SNE25_02480 (mfd)
DNA repair and recombination proteins [BR:
msab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SNE25_02480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WPU94387
LinkDB
All DBs
Position
complement(562705..566061)
Genome browser
AA seq
1118 aa
AA seq
DB search
MNIRDILDRYKADDRIKALAAALNASKNPRVQLRGLVGSSDSAMAVALYFLQHKHMIFVL
PEREEAGYFQADLENLTGKEVLLFPSSYRKPFEFTQPDSSNVLARAEVLNELNHSTEFGQ
LIVTYPEALAEKVIDRASLEKNTLEIAVGSKLSIDFINEFLIEYDFDRVDFVYEPGQFSV
RGGIVDIFSFSHNLPYRIEFFGDFIESIRTFEIESQLSVEQVKSITIVPNVQSKYLTESN
ISLLEYVDVGTQVWIKDVQFTLDIIQTGYKKAVTLWKALSAEEKAQNPEWIDPKFGFTDE
KLIADQLHDFPVVEFGKQFFYQPTASINFDMRPQPSFNKDFTLLIHNFKNNEEVQIENFI
LTDSSRQVERLYAILDDLDKSVKFTPISVSIREGFVDHEQKLACYTDHQIFDRYYKYKLK
KGYQRSQAITLKELRDLKTGDYVTHIDHGIGKYAGLEKVEVNGKQQEMIRLVYADNDLLY
VNINSLNRISKYSGKEGTVPKMNKLGTDTWERLKKTTKKKVKDIARDLIKLYALRKAQHG
NAFSPDSYLQTELEASFLYEDTPDQEKATADFKKDMESPHPMDRLICGDVGFGKTEVAVR
AAFKAVADSKQVAILVPTTILAAQHYKTFTDRLKGFPANIDYVNRFKSSRQIKETLEKLK
EGKVDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVSTKEKLKQMRANVDTLTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVVTELHVFNDTLIKDAVEFEIDRGGQVFFIHNRVA
DLPQLGGLIRKLVPKARIGIAHGQLEGDDLEDVMLKFVNNDYDVLVATTIIEAGLDIPNA
NTIIINYAHMFGLSDLHQMRGRVGRSNKKAYCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFDMYHKILDEAIQELKEDEFKGVFPDDKP
RPFISFTQIDTDLEILIPDEYVTNITERYNLYTELSKLENEVELSAFQQQLHDRFGKIPP
QVNDLLNTMRLQWLGKVIGFEKISLKKNVLRGYFISNQQSTYFESDAFRNVLTFVQSNMR
RTNLKEVKNTLRLSIEGVNSIDQAVLFLSEIAGMVGVD
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
ttgaacatccgtgatattttagacagatataaagctgatgacaggatcaaggcgctggct
gcggcccttaacgcttctaaaaatccaagagtacagcttcgtggtttagtcggatcaagt
gattcggccatggcggtagctttgtattttttacagcataagcacatgatatttgtgctg
cccgagcgcgaggaagccggttattttcaggccgatctggaaaatctgacaggcaaggag
gtgctgctttttccatcgtcgtaccgtaaaccgtttgaatttacccagcccgacagcagt
aatgtactggcccgtgctgaggtgctgaacgaacttaaccactccaccgaatttgggcag
ctgatagtaacttatcccgaggccctggccgaaaaagtgatagatcgtgcatcgcttgaa
aaaaacacgctcgaaattgctgttggaagtaaattaagcatcgattttattaatgagttt
ttaattgaatacgattttgaccgcgttgattttgtatatgaaccaggtcagttctctgtt
cgcggcggtattgttgatatcttttccttctcgcacaacctgccctatcgcatagagttc
ttcggcgattttattgaatctatccgcacgtttgaaattgaaagccagctttccgttgag
caggtaaaaagcatcaccattgtacccaacgtacaatcaaaatatttaaccgaaagcaat
atttcgctactggaatatgttgatgtaggtacacaggtatggataaaggatgtacagttt
acgcttgatattattcaaacaggttataaaaaagcggttaccctttggaaagctttatct
gccgaagaaaaggcgcaaaatcccgaatggattgaccctaaatttggcttcaccgatgaa
aaacttatagccgatcagctgcatgatttccctgtggttgagtttggcaagcagttcttt
tatcagcccacggcttccatcaattttgatatgcggccgcagccgtcttttaacaaagat
tttacgctgcttatccacaactttaaaaataatgaggaggtacaaatagagaactttatc
cttactgattcatcccggcaggtggagcgcttatacgccattttggacgatctggataaa
agtgtaaaatttactcccatcagcgtatctatacgtgaaggttttgtggaccatgagcaa
aagctggcctgctataccgatcaccagatatttgaccgttattataaatataagcttaaa
aaaggctatcagcgctcacaggccatcaccctgaaagaactgcgcgacctgaaaaccggt
gattatgtaacccatattgaccacggcataggcaaatacgccggattagagaaagtggag
gttaacggcaagcagcaggaaatgatccgtttggtttatgccgataacgatctgctttat
gtaaacattaactcgcttaaccgtatttccaaatacagcggcaaagagggcaccgtgccc
aaaatgaacaagctgggtaccgatacctgggaacgcctcaagaaaacaacaaaaaaaaaa
gttaaagacatagcccgcgacctgataaagctttatgccctgcgtaaggctcagcatggc
aatgccttttcgccagatagttacctgcaaaccgaactggaagcatcgtttctgtacgag
gatactcctgaccaagaaaaagccaccgccgactttaagaaggacatggaatcgccgcac
cctatggacaggctcatttgcggtgacgtcggctttggtaaaaccgaagttgccgttcgc
gcggcgtttaaagccgttgccgacagcaaacaggttgccatactggtgccaaccaccatt
ttagctgcccagcattacaaaacatttaccgacaggctcaaaggcttccccgccaatatt
gattacgtgaaccgctttaaatcaagccggcaaatcaaggaaaccctggagaaactaaaa
gaaggcaaagtagatatcattataggcacccatcgcctggtaagcaaagacgtgaagttt
aaagacctggggctgatgatcattgacgaagagcaaaaattcggcgtatcaaccaaagaa
aagctgaaacaaatgcgcgccaatgtggatacgcttacgcttaccgctacacctattccg
cgtacactgcatttttcgctcatgggcgcacgtgatctttccatcatatcaaccccacca
cccaacaggcagccagtagttaccgaactgcatgtatttaacgatacgcttattaaagac
gcggttgaatttgagatagatcgtgggggccaggtattctttatccataaccgtgttgcc
gatctgccacaattgggtggccttatccgcaaactggtgcctaaagcacgcataggcatt
gctcacggtcagctggagggcgacgacctggaggatgtaatgctcaaatttgtaaataac
gattacgatgtgctggtggccacaaccattattgaagccggtttggatatccccaatgcc
aacaccattatcattaactacgctcacatgtttggcctgagcgatctgcaccagatgcgc
ggtcgtgtggggcggagtaataaaaaggcgtattgctacttactgagtccgcctttatca
acactaaccagcgaggcccgcaaacgtctgagcgctattgaggagttcagcgacctggga
agtggctttaatgtggccatgcgcgatctggacattcgcggcagtggcaacttgctgggt
gccgaacaaagcggttttattgccgagataggtttcgatatgtaccacaaaattcttgat
gaggccatacaggagctgaaggaggatgagtttaaaggtgtattccccgatgataaacca
cggcctttcatttcctttactcaaattgataccgacctggagatattgataccggatgag
tatgtaaccaatattaccgaacgatataacctgtacaccgagctttctaaactggagaac
gaggtggaattatcggcatttcagcaacagctacatgaccgtttcggtaaaatacccccg
caggtaaatgacttgttgaataccatgcgcctgcaatggctgggtaaggttatcggtttc
gagaaaatttcacttaaaaagaatgtgctgcgcggttattttatcagcaatcagcaatct
acctatttcgaatcagatgctttccgaaatgtgcttacgtttgtgcaaagcaacatgcgc
cgcaccaatcttaaagaagttaaaaataccctgcgcctgagtattgagggcgttaacagc
attgatcaagccgttttgtttttgagtgaaattgcgggaatggttggggtagattaa
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