Mucilaginibacter sabulilitoris: SNE25_14925
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Entry
SNE25_14925 CDS
T09599
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msab
Mucilaginibacter sabulilitoris
Pathway
msab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SNE25_14925 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msab03400
]
SNE25_14925 (ligD)
Enzymes [BR:
msab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SNE25_14925 (ligD)
DNA repair and recombination proteins [BR:
msab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SNE25_14925 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
Ripply
GH3
Motif
Other DBs
NCBI-ProteinID:
WPU96814
LinkDB
All DBs
Position
3410537..3413254
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AA seq
905 aa
AA seq
DB search
MSLEKYAQKRDFTKTAEPKSGKSKDKDKLTFVIQKHDATRLHYDFRLEMEGVLKSWAVPK
GPSTDPQTKRLAMMVEDHPYDYRTFEGIIPEGEYGGGTVIVWDEGTYEPIEEIRGKKEQE
KYLLKQLKSGSLKIKLHGEKLQGEFALVKTHGMGDNAWLLIKHNDDFASKKDITKEDKSV
LSGKTITVMEKTSDKVWHSNHEETIEKPKKKAASKKKVPEPAEPDESIAETADIDVAAIL
KKAPKAKMPAGIKPMLATLVDEPFDDPDWVYEVKWDGYRALGFINKGEVELLSRNKKTFN
EKFYPIHDILSNWKINAVIDGEILVLNDEGISNFGNLQNWRSEADGELVYYVFDLLWYEG
KNLMGLPLTQRQAILKDILPAEDDRVRLSKVFDASGTDFFNAAERMGLEGIIAKKADSTY
SPDVRSKEWLKIKVSKRQEVIIAGFTKNADTPKQFSSLLLAVYEDKALRYVGKVGTGFSD
SVQKEMMAQFKPLIIDKSPFDEIPDVNKPSRFRPNPPKAKAIWLKPELVCEVAFSEVTSD
GVFRHPSFQGMREDKKAKDVVREVAAPTEDVIEATEKQQEDKHTAAIKPPKQKGRKTLLN
PTDETQVRKINGHDLKFTHLSKIYWPEDKVTKRDMFNYYYQAAEYILPYLKDRPMSLNRF
PNGIHGPSFYQKDVKDKAPDWAKTFPYTTSEGEHKEYLIGTDEASLLWMASLGCIEMNPW
FSRVQSPDNPDYCVIDLDPDKNTFDQVIETAQKVREVLDAVDVPSFCKTSGSTGMHIYIP
IGAKYDYDQSQMFARIIVGIVNKQLPGYTTLERMVANRKGKMYLDFLQNRPGATIAGPYS
LRPKEGATVSMPLHWDEVKPGLTMKHFTIFNSIDRLKSEGDLFKGVLGKGIDLEKTIRKT
QSVFG
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggaaaaatatgcacaaaaacgcgactttaccaaaactgccgaacccaaatcg
ggaaaaagtaaagacaaggacaaactaacttttgttatccaaaagcatgatgccacccgt
ttgcattatgattttaggctcgaaatggagggcgtgttaaaaagctgggcagtacccaaa
ggaccatctaccgatccccaaaccaagaggttggccatgatggtggaagatcatccctat
gactaccgaacatttgaaggcattattccggagggtgaatatggcggcggtaccgtgatt
gtttgggacgagggaacctatgaacccatagaggagataagaggcaaaaaagaacaggag
aaatacctcttaaagcagctcaagtcgggctcgctcaaaattaagttacatggcgagaaa
ttgcagggcgaatttgcactggttaaaacccatggtatgggcgataacgcctggttgctg
atcaaacataacgacgattttgcatcaaaaaaagatattaccaaagaagataaatctgtt
ttatccggtaaaaccataaccgtaatggaaaaaaccagtgataaggtttggcacagcaat
catgaggaaacgatagagaaacccaagaaaaaggcagcaagtaaaaaaaaagtacctgaa
cctgcagagcccgatgaaagtatagccgagacggcggatatagatgttgccgctatattg
aaaaaagcgccaaaggctaaaatgccggctggtatcaaacctatgctggctacgcttgtt
gatgaaccatttgatgacccggattgggtttacgaggtaaaatgggatggttaccgggcc
ttgggctttattaataaaggtgaggttgaactgttgtcgcgtaataaaaaaacatttaac
gaaaaattttatcctatacatgatattctttcaaactggaagatcaacgctgtaattgat
ggtgagatactggttttgaacgacgaagggatctccaactttggcaacctgcaaaattgg
cgcagcgaagctgatggtgagctggtttattatgtgttcgacctgttgtggtatgagggt
aaaaaccttatgggcttacctttaacacaacgacaggccatattaaaagacattttgcct
gctgaagacgatcgagtacgcttgagtaaagtttttgacgcaagtggcaccgattttttt
aacgctgcggaacggatggggctggaaggtattattgctaaaaaagcagatagtacctat
tcgccagatgtacggtcgaaagaatggttgaagatcaaggtaagtaaacgccaggaggtg
atcattgcaggttttacaaaaaacgccgatacacccaagcaattcagctcgcttttactg
gcggtttacgaagataaagcgctgcgttatgtaggcaaggtgggtaccggtttttctgat
agtgtgcaaaaggaaatgatggcacagtttaagccgctgataattgataaaagccctttt
gacgaaatacctgatgtaaataaaccatcgcgctttcgcccaaatccgcctaaggctaaa
gctatatggttaaaaccagagttggtttgcgaagtggcctttagcgaagttaccagtgat
ggagtatttaggcatccgtcgtttcagggcatgcgtgaggataaaaaggctaaggatgta
gttcgtgaagttgccgcgcctaccgaagatgtaattgaagctacagagaaacaacaggaa
gataagcatacagcagcaattaagccacccaaacagaaaggacggaaaacattgttaaac
cctacagacgaaacacaagtacgtaaaattaacggtcacgacctgaaatttactcacctg
agcaaaatttactggcccgaagataaggttaccaaaagggatatgttcaactactattac
caggcagccgaatacattttaccttatttaaaagacaggcccatgtcgctcaaccgtttt
cccaatggcatacatggtcccagcttttaccaaaaggatgttaaggataaagccccggat
tgggccaaaacatttccttacacaaccagcgagggagagcataaagagtatttgataggt
acagatgaagcgagtctgctgtggatggcttctttgggctgtattgagatgaatccctgg
ttcagccgtgtacaatcgccggataatccagattattgcgtaatagatcttgaccctgac
aaaaacaccttcgaccaggtcattgaaaccgcgcagaaggtaagagaagtgctggatgca
gttgacgtgccttcattctgcaaaacatcgggctcaaccggaatgcatatttatattcct
attggagcaaaatatgattatgaccaatcgcaaatgtttgcccgtattatcgtaggcata
gtgaacaaacaattacccggctatactacactggagcggatggtggctaaccggaaagga
aagatgtaccttgattttttacaaaaccgacctggggcaaccattgcaggaccttattct
ttacgcccaaaagaaggggcaacggtatccatgccactgcattgggacgaggtaaagcct
gggctaaccatgaagcattttactatttttaattcaatcgaccgtttgaaatcagaaggc
gatctgtttaaaggtgtattaggaaaaggcatcgacctggagaaaaccataagaaaaaca
cagagcgtgtttgggtag
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