Micropterus salmoides (largemouth bass): 119895023
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Entry
119895023 CDS
T07309
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119895023 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msam03400
]
119895023 (lig3)
Enzymes [BR:
msam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119895023 (lig3)
DNA repair and recombination proteins [BR:
msam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
119895023 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119895023
NCBI-ProteinID:
XP_038563733
LinkDB
All DBs
Position
Unknown
AA seq
1010 aa
AA seq
DB search
MQRHLILLARKTVCVGQRPLGALVRCQQLSKVCRAFCVSSCFKHLPPAVHALHFPQQIHL
FSLVSHKHSLLQNNPPQLYLQQCFSDQPDMAEQRFIVEYAKRGTAGCKKCKDKIQKGIVR
IGKIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKGLID
KHVSDLMAKVNASPKKKVQAKLNTTGQLMAPPADPSVNAPRKFSGFTAAKAGSSSNPGPS
SSPAKASQGSPLSAQLCDPQHKDCLFREFRKLCAMVAEQNSYNVKTQIIEKFLKKGTGGD
KFHGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSDQDAMVRDLEQGDVSETVRMF
FEESKSFPAATKSLLTIQEVDASLTRLAQLTKEDDQQTELESIAKKCTGNDLKCIIRLIK
HDLKMNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQEASNGSGPRKLLTVEASL
MTPVQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDKFSYFSRSLKPVLPHK
VAHFKDYIPQAFPGGHSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDANVCLFVFDC
IYFNGVSLMERPLSERRKFLHDNMVEVRNRILFSEMKHVTRAGDLADMITRVIREGLEGL
VLKDIKGSYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYD
PDSKKWCTVTKCSGGYDDATLARLQKELDVIKISKDPSKIPGWLKIIKNYYPDFIIRDPQ
KAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKSATNLHQLKELFRISKENCD
FKVTAGPSTSSDDKGSSGGDSGGNSPSSSSRGSVPPKKTNRSSPPKPKAVKSEPRTPGSE
TPSAKKIKTESVHSNGQTKTKPTSQLLVPSNDKTLLDIFSGVKLFLPVSVQDFDKLRRYF
VAYDGDLVPDYDAASATHTLAEPEEDSQAKRVSTSWIWECIRKRRVVPPC
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgcagagacatcttattttattagctcgcaagactgtttgtgtaggccaacgacctctt
ggagcacttgtcaggtgtcagcaactctcaaaagtgtgtagagccttttgtgtctcttca
tgctttaaacatctacctccagctgttcatgcgttgcattttccccagcaaatccacctt
ttctccttggtatcccataaacacagcctcctccaaaacaatcctccccagctttaccta
caacagtgtttctccgaccagccagatatggcagaacaaaggttcatcgtggaatacgcc
aaacgcggtactgcaggatgtaagaaatgcaaggacaaaatccaaaagggcattgtgcgc
atagggaagattgtgccaaaccctttcagcgagtctgcaggggagatgaaagaatggtat
catgtgaagtgtatatttgagaagctggaaagggcaagagccaccacgaagaagattgag
gacatcacagatctggagggctgggaggagctgcaggatgaagacaaggggctcatagat
aaacatgtttcagacctgatggccaaagtcaatgcaagtccaaagaagaaggtgcaggcc
aagttaaacactaccggccagctaatggctcctcctgctgacccgtctgtcaacgctcca
cgcaagttctcaggcttcactgctgcgaaggctggcagctccagcaacccgggaccatcc
tcctcacctgcaaaagccagccaaggcagccccctctccgcccagctttgtgatccccag
cacaaggactgcctcttcagagagtttcgcaagctctgtgccatggtggcagaacagaac
agctacaatgtcaagacacagataatagaaaagttcctcaagaagggcacaggtggagat
aagttccatggagatctttacctgacagtgaagctgctcctgcctggcgttgtaaaaagt
gtctacaacctcaatgacaagcagatcgtaaagctcttcagccgcatattccgaagcgac
caggacgccatggtgcgcgatctggagcagggcgatgtgtctgagaccgtgaggatgttc
ttcgaggagagtaaatcatttcctgcggctaccaagagcctcctgaccatccaggaagtg
gacgcctccctgacccgcctcgcccagctgaccaaggaggatgatcagcagacagagctg
gagagtattgccaaaaaatgcaccggtaatgacctaaaatgcatcattcgacttattaaa
catgacctgaagatgaactctggagcaaaacatgtcttggatgctgtggatccgaatgct
tatgatgccttcaaggcctcgcgtaatctgggtgatgtgattgaacgggtgttgaggaat
cagcaggaggcgtctaatggttcaggacccaggaaactcctcactgtggaggcctcactc
atgactcccgttcagcccatgttggcagaggcatgtaaatccattgagtacgccatgaag
aaatgtcccaacgggatgtactctgagatcaagtatgatggagaacgagtacaggtccac
aagaacggagacaaattcagctacttcagccgcagcctcaaaccagtgctgccacacaaa
gtggcccatttcaaggactacatccctcaggcttttccgggaggccacagtatgatactg
gatgctgaagtcctcctaattgacacaaacaccagtaaaccccttccctttgggaccttg
ggtgtacacaagaaagcagcctttcaagatgccaacgtgtgcctttttgttttcgattgt
atctacttcaatggtgtgagtctcatggagaggcctctgagtgaacgcaggaagttcctg
catgacaacatggtggaagtccgcaataggatcctgttctcagagatgaagcatgtcact
agggcaggagatctggctgatatgataactcgtgtcatccgagaaggactagaaggcctg
gtgctaaaagacataaagggcagctatgaaccagggaagcgccactggctgaaggtgaag
aaggactatttgaacgaaggagcgatggcagacacagctgacctggtggtgctgggggcc
ttctatggaaaaggctcaaacggtggcatcatgtccagttttctaatgggctgttatgac
ccagactcgaaaaaatggtgcacagtcaccaagtgctccggaggctatgatgacgccacc
ttggccagactccagaaagaactggatgtgatcaaaatcagcaaggacccaagcaaaatc
ccaggctggttgaaaatcatcaagaactattatccagatttcattattcgcgatcctcag
aaagcacctgtctgggagatcacaggcgcagagttttccaaatcagaaatgcacaccgct
gatggcatctctatccgctttccccgcatgacgcgcatccgtgatgacaaggactggaag
agtgccaccaacttgcaccagcttaaagagctcttccgcatatcaaaggagaactgtgac
tttaaagtgacagctggaccgtctacatccagcgatgacaagggctcatcaggaggggac
agcggaggaaactccccgtcgtcctcgtcccgtgggagtgttccacccaagaaaaccaac
cgcagcagcccacccaaaccaaaggctgtaaaatctgagcctcgcactcctggttcagaa
acacccagtgccaagaagataaagactgaaagtgttcacagcaacggacaaaccaaaaca
aagccaacctctcaactgctggttccaagcaatgacaagacactgctggacatcttcagc
ggggtgaagcttttcctgcccgtctcagtgcaggactttgacaaactgaggcggtacttt
gtggcgtatgacggagaccttgtaccggactatgacgccgcctcagccacacataccctg
gctgaacctgaagaggacagccaggccaagagagtctcaaccagctggatctgggaatgt
attcgcaagaggcgcgtcgtccctccctgttaa
DBGET
integrated database retrieval system
