Micropterus salmoides (largemouth bass): 119895029
Help
Entry
119895029 CDS
T07309
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119895029 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msam03041
]
119895029 (ddx46)
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119895029 (ddx46)
Spliceosome [BR:
msam03041
]
Complex A
U2 snRNP components
U2 related factors
119895029 (ddx46)
Complex B
119895029 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
119895029
NCBI-ProteinID:
XP_038563743
LinkDB
All DBs
Position
Unknown
AA seq
1065 aa
AA seq
DB search
MGRESRYARMIRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRDRNRRERSRSRDRRRSRS
RDRKRPRRSRSRERRRSRSRERRRSGSRTRARRSRSGSPSKSKRPDEKSRSKEKDIIDPL
SEKKKIKEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGELKKELEE
MKQGKKWSLEDDDDDDEDVSAPLEGDDDEDGEEKGEQNEKEIKEEKKEEEEKETPMEQQV
EEDDVDPLDAYMEEVKQEVKKFNMGAMRGNDKKGSMTVTKVVTVVQTKKGIHTHKKKGEL
MENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHGKIQYEPYRKNFYVEVPELAR
MSPEDVTAYRLELEGIIVKGKGCPKPIKTWVQCGVSMKILSSMKKHGYEKPTPIQAQAIP
AIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKE
CKKFSKQLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVT
YVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPIEVQVG
GRSVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADSLLKDLMKASY
PCMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYV
HRAGRTGRAGNKGYAYTFITEDQVRYAGDIIKALELSGSPVPLELEQLWASFKDQQKAEG
KIIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSK
KRVKDLSAPGAATGAAGGVSTTATVPGGLPGLGPTSAGNIQKLEMAKRLALKINAQKNLG
AEAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQA
ETIKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKI
YLAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtcgaggtatgccagaatgatcagacactacagaaaacggtctgcgtct
cggggacggtcagggagccgatctaagagtcgatccccggacaaacgctccaagaaagac
gaccgagaccggaacaggagggagcgatcacggagccgggaccgccgcaggtcccggtcc
agagacagaaaacgacccaggcgctcaaggagcagagaaaggagaaggtccagaagcaga
gagaggaggaggtctggcagcaggacccgagctcggaggtcccgatccggtagccccagc
aagagcaagagaccagatgaaaagtcaaggagcaaggagaaagacataattgatccttta
tctgaaaagaaaaagattaaagaggagaaagaggatgagaaggttgaggatcaagacttt
gaccagaacaagctggaggaggagatgaggaagaggaaggaacgtgtggagaagtggagg
gaagagcagaggaagaaggcaatcgaaaacatcggagagctcaagaaggaactggaggag
atgaaacagggcaagaagtggagcttggaggatgacgatgacgatgacgaggatgtttca
gctcctttggagggagacgatgatgaagacggggaagaaaagggggagcagaacgagaag
gagataaaggaggagaaaaaagaggaggaggagaaggagactcctatggagcagcaggta
gaagaggatgacgtggatccccttgacgcctacatggaggaggtgaaacaggaggtgaag
aagttcaacatgggagccatgagaggaaatgataagaaaggatcaatgaccgtaaccaaa
gtggtcacagttgttcaaaccaagaagggaattcacactcacaagaagaagggtgagctg
atggagaatgaccaggatgctatggaatactcttcagaggaggaggaagtggatctgcag
acagctctgacaggcttccagaccaaacagagaaaggtcctagagcctgttgaccatggg
aaaatccagtacgagccttaccgcaaaaacttctacgtggaggtccctgagctcgccaga
atgagtccagaagatgtgactgcgtacaggctggaactggaaggcattatcgttaaaggg
aagggctgtcccaaacccatcaagacgtgggtgcagtgtggggtgtctatgaagatcctc
agttctatgaagaagcatggctacgagaagcccacccccatccaggcccaggccatccct
gccatcatgtcaggccgagacctcatcgggatcgccaagaccggcagcgggaaaaccata
gccttcctgctgcccatgttccgacacatcatggaccagaggcccctggaggagtctgag
gggccgatctctgtaatcatgactccgaccagagagttggctctgcagatcaccaaggag
tgtaagaagttctctaaacagctgggactccgtgtagtgtgtgtttatggaggcacgggt
atcagcgaacagattgctgagctgaaaagaggagcagagatcatcgtgtgcaccccggga
agaatgattgacatgttgggggccaacagcggtcgagtcaccaacctgcgcagagttaca
tatgtggtgttggatgaagctgacaggatgtttgacatgggtttcgagccacaggtgatg
cgtattgtggacaacgtgcgtccagatcgacagacggtcatgttttcggccaccttccct
agagccatggaggcgctggctcgtaggatcctcgccaagcccattgaggtccaggtggga
ggccgcagtgtcgtctgctctgatgtggagcaacatgtgctagttattgaagaggacaag
aagttcctgaagctgctggagattctgggtcactaccaggagaagggctcggtcatcatc
tttgtggacaagcaagagcatgcagactcactgctgaaagacctgatgaaagcctcgtac
ccctgcatgtcactgcacggaggaatcgaccagtacgacagagacagcatcatcaacgac
tttaagaatggagcatgtcgtctgatggtggccacctccgtggcagccagaggcctagat
gtcaagcagctgattctggtggtcaactacaactgtcccaaccactacgaggactacgtc
cacagagctggacgcacaggccgagcaggcaacaagggctatgcctacaccttcatcaca
gaggatcaggttcgctatgctggtgatatcatcaaagccttggagctgtccggctctcct
gtcccgcttgaactggagcagctttgggcgtccttcaaagaccaacagaaagcggagggt
aagatcattaagagcagcagcggcttctcaggaaaaggcttcaagtttgacgagacagaa
catgcattggccaatgagagaaagaagctgcagaaagctgcccttggactgcaggactct
gatgatgaggacggagccctggacattgaggagcaaattgagagcatgttcaactccaag
aagagggtgaaggatctgtctgctcccggagcggccaccggtgctgcgggaggagtttcc
accacagcaaccgtccctggagggctgccaggcctcggacccacgtctgctggaaacatc
cagaaactggagatggccaagaggctggcgctcaagattaatgctcagaagaacctgggc
gctgaggctcaggatgtaatgcagcaggccaccaatgccatccttaggggcggcaccatc
atgacaccttcggtgtcagccaagaccatcgcagagcaactggctgagaagattaatgcc
aagctgaactacacccctgtggagaagctggaggaggagcggcaggcggctgaacaggcc
gagaccatcaagagatacgaagaggagctggagatcaacgacttccctcagacggccagg
tggaaggtgacatctaaagaagcactgcagagaattggtgaatactctgaagccgccatc
accatcagaggaacctattttcctccaggcaaagagcccaaggagggggaacgcaagatc
tacctcgctattgaaagtgcaaatgaactggctgtacagaaagccaaaacagagattaca
cgactaatcaaggaagagctcatcagattacaaaattcctaccagccaacgagcaaaggc
cgctacaaagtgttgtag
DBGET
integrated database retrieval system
