Micropterus salmoides (largemouth bass): 119900490
Help
Entry
119900490 CDS
T07309
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03013
Nucleocytoplasmic transport
msam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119900490
03015 mRNA surveillance pathway
119900490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119900490
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119900490
5.6.2.5 RNA 5'-3' helicase
119900490
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119900490
mRNA cycle factors
Common to processing body (P body) and stress granule
119900490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
119900490
NCBI-ProteinID:
XP_038571422
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGGGAGHMS
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSGNQGSSQGNGP
NSQVSQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagaccctcaccttcttggacactgaggaa
acggagttgctcggagcggacacccagggctccgagtacgacttcaccgacttcactctt
cccagccagacgcaaactcaaggccagacccagagccagctggacgggcaggtaaatggt
cctgatgagggtcttcacaacggtggagtggatgactccgtggccaaagccagccagctg
ttggccgagctcaactttgaggaggatgaagaagacacatactacaccaaagacctgcct
gtgcatgcatgcagttactgtggtatccacgatccagcgtgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatggacgtggcaacacatctggcagtcacattgtgaaccac
ttggtgagagccaagtgcaaagaggtgacgctgcataaagatgggccgctgggcgagacg
gtgctggagtgttacaactgcggctgtcgcaatgtcttcctcctgggcttcatcccggcc
aaggccgattccgtggtggtgctactctgcaggcagccctgtgccagccagagtagcctg
aaggacatcaactgggacagctcgcagtggcaaccactgatccaggaccgctgctttctg
tcctggctggtgaagatcccatcggagcaggagcagcttcgggcccgccagatcactgcc
cagcagatcaacaagctggaggagctctggaaggacaatcccagtgccaccttggaagac
ctcgagaaaccgggagtggacgaggagccccagcatgtgctgctacgctatgaggacgcc
taccagtaccaaaatatctttggccctttggtcaaactagaggcagactacgacaagaag
cttaaggagtcccagactcaagacaatataacagtcaggtgggacctgggactgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcaa
ggtgatgagatctgcttgcgatacaagggagacctggccccgctgtggaaaggcatcggt
catgtcatcaaagtccctgacaactatggggatgaaattgccattgagttgcggagcagt
gtgggagcacctgtggaaatcccccacaacttccaggtggactttgtgtggaagtccact
tcctttgacaggatgcagagcgccctcaaaacgtttgcagtggatgagacctccgtgtct
ggctacatttatcacaaactgttgggccacgaggttgaggatgtcaccatcaagtgccag
ctgccaaagcgcttcacggcccagggcctgcccgacctcaatcactcacaggtgtacgct
gtgaagacggtgctgcagaggcctctcagtctgatccagggtcctcctggcactgggaag
actgttacctctgccactattgtctatcacctgtcccgacaaggcaatggaccagttttg
gtgtgtgctcccagtaacattgccgttgatcagttgactgagaagattgacaagactgga
ctgaaggtcgtcaggctgtgtgccaagagccgggaggccatcgagtcaccagtgtccttc
ctggcgctgcacaaccagatcagcaacatggacagtatgccggagcttcagaaactacaa
cagctgaaggatgagactggtgagctgtcatctgctgatgagaaacgctacagggctttg
aaacgcactgcagagagagagcttcttatgaatgctgatgttatctgttgtacctgcgtc
ggggctggagaccctcgactggccaagatgcagttccgatccatcctgattgatgagagc
acccaggccaccgagccagaatgtatggtgcccgtggtgctgggagccaagcagctcatt
ctggtgggtgatcactgccagttgggtcctgtggtgatgtgtaagaaggcagccaaagca
ggtctgtcccagtccctgtttgaacgcttggtggtcctaggaatccggccaatccgcctg
caggtccagtaccgcatgcacccggctctcagtgccttcccctccaacatcttctacgag
ggctccctgcagaatggcgtgactgcagctgaccgtatcaagaaaggctttgatttccag
tggccgcagccggacaagcccatgttcttctacgtgactcagggtcaggaggagattgcc
agctctggaacctcctaccttaacaggacggaggcggccaacgtagagaagatcactacc
aggctgctgaaggctggagccaaacctgaccagatcggcatcatcaccccatatgagggt
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactctat
cagcaagtggaaattgccagtgtggatgccttccagggcagagagaaggacttcatcatc
ctgtcttgtgttcgtgccaatgagcaccagggcatcggcttcttgaatgacccacgtcgt
ctcaacgtggcgctgaccagagccaagtatggtgtgatcattgtgggaaaccctaaggcc
ctctccaagcagccgctgtggaacaacctgctgaacaactacaaggagcagaaagtcctc
gtggagggacccctcaacaacctcagggagagcctcatgcagttcagcaagccccgcaaa
ctggtcaacaccatcaaccctgggggacgttttatgagcactgcgatgtacgatgcccgc
gaggctctcatccctggctctgcctacgaccgcagcaatgctgctggacgtccgtccaac
atgtactttcaaacccatgaccagattggtatgattggggggggggccggtcacatgtct
gccatgaatattcccatacccttcaatctggtgatgccacccatgcctccacccagttac
ctgggtcagaccaacggccctgctgcaggtcgtggagctatgaagggaaaacctggccgt
ggtgggcggcagagggtccgtggctcgggaaaccaggggtccagtcagggtaacggacca
aacagtcaggtcagccaggatggggcctcccagtccttctcccaggggccactgacacaa
ggctacatctccatgagccagccctctcagatgagccagcctggcctctcccagccagag
ctgtcccaggacagctacctgggcgatgagtttaagtcccaaattgatgtggctttgtcc
caggactcgacttaccagggtgaacgcgcataccagcatggtggggtgactggactgtca
cagtactag
DBGET
integrated database retrieval system
