Micropterus salmoides (largemouth bass): 119901744
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Entry
119901744 CDS
T07309
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03030
DNA replication
msam03410
Base excision repair
msam03420
Nucleotide excision repair
msam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119901744 (lig1)
03410 Base excision repair
119901744 (lig1)
03420 Nucleotide excision repair
119901744 (lig1)
03430 Mismatch repair
119901744 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msam03032
]
119901744 (lig1)
03400 DNA repair and recombination proteins [BR:
msam03400
]
119901744 (lig1)
Enzymes [BR:
msam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119901744 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
119901744 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
119901744 (lig1)
DNA replication proteins [BR:
msam03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
119901744 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
119901744 (lig1)
DNA repair and recombination proteins [BR:
msam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
119901744 (lig1)
NER (nucleotide excision repair)
Other NER factors
119901744 (lig1)
MMR (mismatch excision repair)
Other MMR factors
119901744 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
119901744
NCBI-ProteinID:
XP_038573311
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MQRSIASFFQPRSKDTGSQKKTTDEPVKKPAKSPLKVQNGVQEADSPIKKVAKRSRQILD
SDDDEAPVVKEQVATKGQGDKEAVGKTEKDDVFKAVPTPLSPPPAPATPVTPATPATPAS
SASPGTPNTPNSISPSGIVKRKTARKMFPKRKLDESRSSSESQKEEAREEQGQQHKRPRV
ESSASTAGDTDEPMEEGAKEEGVEKAVTEANRPDEEVENEKKEQGERAKEEERVERKGSD
EKEKKAEGAGKKNEAKEKTDDEREPASAKKEVVEKDTREGEESPKSQMAKKQKEAKEQKD
KELPKKSPISSFFAPRKAAVKTEKPENNEGEKKTSAERKTSAEESKDTKGDSTSGQTDYD
PSRANYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLFRSVLLLSPDDL
LCCVYLCLNQLGPAHLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSR
SNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLA
GKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGNGMSAESKRAWIEEKSLILKQTY
CEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEY
KYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKNDSVVSCVLDAEAVAWDR
EKKQIQPFQVLTTRKRKDVEASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLKESFS
EVEGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKK
DYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDDENEEFQSVCKIGTGFKDEDLEQ
HYKFLKEHILPKPRAYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDPEKG
ISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaggagcaaggacacgggtagtcagaag
aaaactacggatgaaccagtgaaaaaacctgccaaaagccctctcaaggtgcagaatggt
gttcaggaagctgattcccccatcaagaaggttgccaagcgcagccgtcagatcctggac
agcgacgatgacgaggcaccagttgttaaagaacaagtcgctaccaagggacaaggagac
aaagaagctgttggtaaaacagaaaaggatgacgtgtttaaggcagttccgacccccctg
tctcctccacctgccccagctacacctgtgacccccgccactccagccaccccagcctct
tcggcttcacctgggacccccaacaccccaaactccatctccccctcgggtattgttaaa
cgcaagactgcgaggaagatgttccccaagaggaagctcgatgagagcaggagcagcagt
gagagtcagaaagaggaggccagggaggagcagggtcagcagcacaaacgaccccgtgtg
gagagcagtgccagcaccgcaggggacaccgatgaacccatggaggagggagcaaaggaa
gaaggagttgaaaaggcagtgaccgaggctaaccgcccagatgaggaggtggagaacgag
aagaaagagcaaggagagagggccaaggaggaggagcgggtggagagaaagggctctgat
gagaaagaaaagaaagctgagggggcgggaaagaaaaatgaggcaaaggagaagacagat
gatgagagagagccagccagtgccaagaaggaggtggttgaaaaggacacgcgagaggga
gaagagagcccaaaaagtcaaatggcgaaaaagcagaaagaagcaaaagagcagaaagat
aaggagctgcccaagaaatcccccatcagcagtttctttgctccaagaaaagctgctgta
aagacagagaaaccagagaataatgaaggagagaaaaagacgagtgcagagaggaagacg
tcagccgaggagagcaaagacacgaaaggtgattcaacgtcgggacaaacagactacgat
ccatccagggccaactaccatcctgtggaccacgcctgctggaagcagggccaaaaagtg
ccgtacttggctgtggctcgcacctttgagaagattgaagaggactctggcagactgaga
aacatcgagacactgtcgaacctgtttcgctccgtgctgctgctctctccagatgacctg
ctgtgctgtgtgtacctgtgtttgaaccagctgggtcctgcccacctggggatggagctt
ggcgttggggagactgtgctaatgaaagctgttgctcaagcaactgggcgacaattggac
aaaatcaaggcagaggcgcaagagaagggagatctgggccttgtggccgagagttcccgt
agcaaccagcgcatgatgttccaaccggccagtctgacagcagggggcgtgttcaggaaa
ttgaaggaaatcgccagcatgagtgggaactcggccatgaataagaaaatcgacatcatc
aaaggcctctttgtggcatgccgcttttccgaggcccgctacatagtcaggtccctggct
gggaagctgaggataggcctggctgagcagagtgtactatcagcactaagccaggctgtg
tgcctgactccccctggacaaggattcccccccgctgtgatcgacgcagggaacgggatg
agtgctgagagcaagcgggcctggatcgaagagaagagtctcattctcaaacagacttac
tgcgagatgcccaattacgacgtccttattcctgttctgctaaaagagggcatagaccag
ctacccaatcactgcaagctcactccaggtgtgccgctgagacccatgttggctcacccc
accaagggtgtcggcgaggtgatgaagaggtttgacgaggctgcgttcacctgcgagtac
aaatacgacggagagcgtgcacagattcacattctggagagtggcgaggttcgaatattc
agccgcaaccaggaagacaacaccagcaaataccctgatatcatctctcgcattcccaag
gtgaagaatgactctgtggtgtcctgtgtcctggacgcagaggcggtggcctgggatcgt
gaaaagaaacagattcagcccttccaggtcctcaccacccgcaagagaaaggacgtggaa
gcctcagagatcaaagtccaagtgtgtgtgtacgcctttgacctcctctatctcaacggc
gagtccctggtgcgacagccattgtgtcggcgtcgggctctgctgaaagaaagcttctca
gaggtggagggagagtttgtgttcgcccgatccatcgactccgacaacaccgacaccatc
gcagagttcctggagcagtctgtccgagactcctgcgagggcctaatggtgaagactctg
gagaaggatgccacctatgaaattgccaagcgctctcataactggctcaagctgaagaag
gactacctggagggggtgggcgacacagtggacctgtgtgtgattggagcctacctggga
aaaggcaagagaacgggcacctatgggggcttcctgctggcctgctacgatgacgagaat
gaggagttccagtccgtctgcaagatcgggacaggcttcaaggatgaagatctggagcag
cattacaagttcctaaaggagcacattctgcccaagcctcgtgcctattaccgtgtcgac
cagtcagcagagcccgatgtgtggctggacgccgtgcaggtttgggaggtgaagtgcgca
gacctgtcactgtcgcccgtctacaaggctgccatgggaatggttgatccagaaaagggc
atttccctgaggttcccccgcttccttcggatcagagacgacaagaagcccgaggatgcc
acgaccggagctcagatcgctgatttgtacaagaagcagcagcagattcagaatcagggg
gagaaggcggacccggaggactactactga
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integrated database retrieval system
