Micropterus salmoides (largemouth bass): 119901757
Help
Entry
119901757 CDS
T07309
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119901757 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msam03400
]
119901757 (lig4)
Enzymes [BR:
msam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119901757 (lig4)
DNA repair and recombination proteins [BR:
msam03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119901757 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
ATG17_like
Motif
Other DBs
NCBI-GeneID:
119901757
NCBI-ProteinID:
XP_038573343
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MEGTSKSDAAGQPSVAAQVPFLHLCSTLEKIQKSKLRPDKSKILRDFIESWRKFHSALHK
DDPKTTDSFYPAIRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASRQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPSVSL
SEVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFYIETKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKGHVVNCILDGEMMAYNPTTETFMQKGSKFDIKRLV
EDSELQTCFCVFDVLLVNDQKLGKETLKKRDEILQTVFTPVKGRIHLVPKTDARTMQEVV
NALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYMDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAIAEAPKPGEKPSVFHSFCRVGSGYTMKELHDLGLKLAKHWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDHFRGKASGKLASRHLHIDDAEPQKKKRKLPSKPKKVVGIIDHFKPQDLSGITKET
DMFEDVEFCILNGTEDHPKAELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLILAD
QHDVVWAAWLLECLRQKEVVPWQPCHMIHMSPSTREHFAKEYDCYGDSYFVETDEQQLRE
VFGRIRSVDASAAVNIGQVEQRYGWEDLPTSMFRPFKIYMDCYANIGDPDTIIPATCLDI
RALEFRFHGGTVVQTLEEGVSHVIIAEETRLPNLRTLRRGFRKKFKIVRDSWVTDSINAG
YLMTDTDYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttccaaaagcgatgctgcaggtcagccctctgttgctgctcaagttcct
ttccttcacctgtgcagcacattagagaaaatccagaagtctaaactccgtccagataaa
tccaagatcctcagggacttcattgagtcatggaggaagtttcattctgccctccacaaa
gacgaccccaaaacaacagactctttctacccagctattcgtctcattgtcccccccttt
gaacgagagcgcatggcgtatggcatcaaagagagcatgttagctaaactctacatcgat
gtattaggcctgccaaagaatggcccggaagccaataaactgttgaactaccgtgctccg
actacgtcccaaggagaagctggagactttgctggcatggcgtactttgtgctgaagaaa
cggtgcaccagccaaggaaacctcagcatcaaagaagtcaatgactttctggactcggtg
gccatcaacaacgctagcaggcagaaggatcttgtgaaaaagagcctgctgcacctcatc
acccagagctcggctctcgagcaaaaatggctcatcagaatgattctgaaggacatgaag
ctcgggatcagcaaagaaactgttctccaagtcttccacccagatgctgctgagctttac
aacgtcaacacagacttaaacaaggtgtgccagcagctccacaacccctccgtttcttta
agcgaagtctctatcggactgttctctgctttcaagcctatgttggcagctgtggcgaac
atccgcaatgtggagaaacagatgggaaacagcccattttatattgagacaaagctggat
ggggagcgtatacaattgcacaaagatggggacgtgtacaagtacttcagccgaaatgcc
tttgaatacacccagcagtttggaggatccccactggagggctccctgacaccttacatc
cacaacgttttcaaaggccacgttgtaaactgcatcctcgatggtgagatgatggcgtac
aacccgaccactgagaccttcatgcagaaagggagcaaattcgacatcaagagactcgtg
gaagactccgagttacagacgtgcttctgcgtgtttgacgtattgttagtcaatgaccag
aagcttggcaaggaaacactcaagaagcgcgacgagatccttcagacagttttcacccca
gtaaagggaaggatacacctggtgccaaagactgatgccagaaccatgcaggaggttgtg
aatgccctcaatgacgccattgacaacagagaagaggggatcatggtgaaggatccttta
tccatctacaaacctgacaagcggggggagggatggctgaaaataaagcccgaatatatg
gatggcttgatggatgagcttgacctgctgattgttgggggttactgggggaaagggaga
cggggtggtatgatgtcccatttcttatgtgctattgccgaagctccaaagcctggcgag
aaaccctcagttttccactctttctgccgcgtcggctctggctacaccatgaaagagttg
cacgaccttggcttaaagctagccaagcactggaaagtctaccggaaaaatgatccgcct
gcatccatcttgtgtggaacagagaaaccggaagtttacattgaaccctgcaactcagtt
atcatccaggtcaaggcggctgaaatagtcggtagtgacatgtataaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgagacgacaaggagtggcaccagtgcatgact
ctggcagagctggatcacttccgcggcaaggcatctgggaaactcgcctcgcggcacctt
cacatcgatgatgccgaaccgcaaaagaagaagcgcaagctgccatcgaaacccaagaag
gtggtcgggatcatcgaccactttaaaccccaggacctctccgggatcaccaaagagaca
gatatgttcgaggatgtggagttctgtatcctgaatggcacagaggatcaccccaaggct
gagctggagaagggtgtggccagatgtggcggtatcgtggttcaaaacccaggacgggac
acctactgcgtgattgctggggtggagaatatgcgcgtgaagaacctgattttggccgac
cagcatgacgtggtgtgggccgcctggctgctggagtgcctgcgccagaaggaggtggtc
ccatggcagccgtgtcacatgatccacatgtcgccctccaccagggagcactttgccaag
gagtacgactgctatggcgacagctactttgtggagacggacgagcagcagctgcgggag
gtgttcggccggatcagaagcgtggacgcgtctgcggccgtgaacatcggccaggtggag
cagcgttacggctgggaggaccttcccaccagcatgttcagacccttcaagatttacatg
gactgctacgccaacataggagaccctgacaccatcatacctgccacctgtttggacatc
cgcgccctggagtttcgcttccatggagggacagtggtgcagacgttagaggaaggagtc
tcccatgtcattatcgcagaggaaacaagacttccaaatttaaggactctgaggcgcggc
tttaggaagaagtttaagatcgtaagagactcgtgggtgacggattcaatcaacgcaggt
tatctgatgactgacaccgactacttagtttga
DBGET
integrated database retrieval system
