Micropterus salmoides (largemouth bass): 119902228
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Entry
119902228 CDS
T07309
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03013
Nucleocytoplasmic transport
msam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119902228
03015 mRNA surveillance pathway
119902228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119902228
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119902228
5.6.2.5 RNA 5'-3' helicase
119902228
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119902228
mRNA cycle factors
Common to processing body (P body) and stress granule
119902228
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
119902228
NCBI-ProteinID:
XP_038574193
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQGQTQSQLDSQVNGPD
SVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKW
FCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADS
VVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKES
QTQDNITVRWDLGLNKKRIAYFSLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVIKV
PDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYH
KLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA
TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHN
QTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGDP
RLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQS
LFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPD
KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYL
VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL
TRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTI
NPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPSPMTSLNIPI
PFNLVMPPIPPPGYMGQVNGPTSVIRDILPPGRGGGMKGKGGSGGGGGGGGGTRGGRQRN
RSNHSGGNGGADRSHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQAGLSQPELSQ
DSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctgacgttcctcgacacggaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgattttaccctg
ccgagccagacccaaggccagacccagagtcagctagacagccaggttaatggccctgac
agcgtgctgcagaatggagacgaccctgtggtaaaagccagtcagttgctggcagagttg
aactttgaggaggatgaggaggacacctactacaccaaggatcttcctgtacacgcctgc
agttactgtgggattcatgatccagcctgtgtggtctactgcaacaccagcaagaagtgg
ttttgtaatggccgtggaaacacatcaggcagccacattgtaaaccacctggtgagagca
aagtccaaggaggtgaccctgcataaagatggccctctgggggaaacagtactggagtgc
tacaactgtggctgccgcaatgtcttccttctcggcttcatccctgctaaagccgactca
gtagtggtgttactgtgcaggcagccatgtgccagtcaaagcagcctgaaggacatcaac
tgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctggctcgtc
aaaatcccttcagagcaggagcaactcagggctcgtcagatcaccgcccagcagatcaac
aagctggaggaactgtggaaggaaaatcctactgcgacgttggaggacctggagaagcct
ggtgtggatgaggagccacaacatgtgctgcttcgctatgaggatgcttaccagtaccag
aacatttttggtcctcttgtgaagctggaggccgactatgataagaaactcaaagagtcc
cagactcaagacaacattacggtcaggtgggacttaggcctgaataaaaagaggattgct
tatttctctcttcccaagacagactcagacatgcgactgatgcagggagatgaaatttgc
ctcaggtacaagggagacctggcccctccatggaaaggcattggacatgttatcaaagtc
cctgataactacggtgatgagattgccatagagctacggagcagtgcgggggctccagtg
gagatcccacacaactttcaggttgactttgtgtggaagtccacttcctttgacaggatg
cagagtgccctgaagacatttgctgtggatgagacttcagtgtccggttacatctaccac
aaactgctgggacatgaggtagaggatgttgtcatcaagtgtcagctgcccaaacgcttc
accgctcaaggcctgcctgaccttaaccactcacaggtgtatgctgtgaagacagtgtta
cagcgtcccctgagtctgatccagggtcctcctggcacaggaaagacggtaacctcagca
accatagtctatcacctggctagacagggcaacggtccagtgctggtgtgtgctcccagt
aacattgctgtcgaccagcttacagagaagatccaccagacaggcctcaaggtggtgagg
ctgtgtgccaagagcagggaggccatcgactcgcctgtgtccttcctggctctgcacaac
cagacccgtaacatggacagtatgccagaacttcagaagctccaacagctgaaggacgag
actggagagctgtcctcctcagatgagaagcgctacagagcgctgagacgcactgctgag
agggagctgcttatgaatgcagatgtgatctgctgtacctgtgttggggcgggggatcct
cgtctggccaagatgcagttccgctcaatcctgatcgatgagagcacccaggccaccgaa
ccagagtgcatggtgcctgttgtcctgggagccaaacagttgattctggtgggtgatcat
tgccagctgggccctgtggtgatgtgtaagaaggcagctaaagcaggtctgtcccagtct
ctgtttgagcgtctggtggttttggggatccggcccatccgtctgcaggtccagtaccgc
atgcacccagccctcagtgccttcccctccaacatcttctatgagggctctctgcagaac
ggagtcactgctgcggaccgtgtgaagaaaggatttgacttccagtggccgcagcctgac
aagcctatgttcttttatgtcacccaaggccaagaggaaattgccagctctggaacatcc
tatctcaacaggactgaggcagccaatgtggagaaaataaccacaaggttactgaaggct
ggagcaaaacccgatcagattggcatcattacgccctatgagggacagaggtcctacctg
gtccagtacatgcagttcagtggctccctccataccaaactctaccaggaggtggaaata
gccagtgtggatgcctttcaaggcagagagaaggacttcatcatcctgtcctgtgtgagg
gccaatgagcaccagggcatcggcttcctcaacgatcccaggcgtctcaatgtggcactc
actagggccaggtatggtgtgatcattgtgggaaaccccaaggccctgtctaagcagcct
ctgtggaaccacctgttgaactactacaaggagcagaaggtcctggtcgaaggccccctt
aataacctgagagagagcctcatgcagttcagcaagccccgcaagctagtcaacaccatc
aaccctgggggtcgattcatgagcacggccatgtatgatgccagggaggccctcattcct
ggatctgtgtatgaccgcagcagcaatgggcgtacatccaatatgtatttccagacccat
gaccagattggtatgattggcacaggccccagtcccatgacttccctgaacatccccatc
ccctttaacctcgtgatgccccccatacctccacctgggtacatgggacaggtcaatgga
cccacatcagtgatacgtgacattttacctccaggccgtggtggaggtatgaaaggcaag
ggaggcagtggaggaggaggaggaggaggaggagggactcgaggtggccgtcaaagaaac
cgcagcaaccacagcggaggcaatggaggagcagaccgcagtcacatgagtggcagccag
gccagccaggacctgggctcacagcccttctcccagggacctctgacgcagggctacatc
aacatgagccagccatcacagatgagccaggctgggctctcccagcccgaactctcacag
gacagttacctaggagatgagttcaagtcccagattgatgtggctttgtcccaggactcc
acctaccagggggagcgggcctaccaacacggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
