Micropterus salmoides (largemouth bass): 119903315
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Entry
119903315 CDS
T07309
Symbol
ddx3xb
Name
(RefSeq) DEAD-box helicase 3 X-linked b isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
119903315 (ddx3xb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msam03019
]
119903315 (ddx3xb)
03041 Spliceosome [BR:
msam03041
]
119903315 (ddx3xb)
03036 Chromosome and associated proteins [BR:
msam03036
]
119903315 (ddx3xb)
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119903315 (ddx3xb)
Messenger RNA biogenesis [BR:
msam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119903315 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
119903315 (ddx3xb)
Spliceosome [BR:
msam03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119903315 (ddx3xb)
Chromosome and associated proteins [BR:
msam03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
119903315 (ddx3xb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-GeneID:
119903315
NCBI-ProteinID:
XP_038575427
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MSHVAVENVHGLEQQLAVLDLSSADGQGGGTNRRYIPPHLRNKDASKNVGNAFAAGRQGG
YTIAPAANYGWDGGRNNFVNGYHDNRMAGGNSFNRGPPRMERGRGGVGGGYRGNRGGAFN
PINPAQPMGFAGYENKDTGGWNTAKDAYSSFGNNRGKSAFFNDRGNANRGRFEHGGFGGG
GGGGGNSRWVEESRDEGDWSKPTPRNERLEHELFSASNTGINFEKYDDIPVEATGQNCPH
HIESFQDVDMGEIIMGNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLP
ILSQIYTEGPGEALNAAKASGQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRS
RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRML
DMGFEPQIRRIVEQDTMPHKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSE
NITQKVVWVEESDKRSFLLDLLSATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHG
DRSQRDREEALSQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG
RVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHKSSNRGRSKRFSG
GFGARDYRQTAAGGTSGGFGGRGGRNQAGHGGTRGFGGGGFGNFYTSDGYGGNYSHSQVD
WRHSVNAHMWELLANQKWGKDDLMTSVQVSFT
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgtccacggtctagagcagcagctcgctgtcctagac
ttaagttcagcagacggacaaggtggaggcactaacaggcgatacattcctccacattta
cggaacaaagacgcttccaaaaatgtaggaaatgcctttgctgctggtcgacagggtggc
tacaccatagcgcccgcagccaactatggttgggatggggggcgcaacaactttgttaat
ggctaccatgacaaccgcatggctggcggcaactcttttaaccgtggcccgcctcgcatg
gagcgtggccgaggtggtgttgggggaggttaccgcggcaacagaggcggggccttcaac
ccgatcaacccagcgcagccgatgggcttcgctggctacgaaaataaagacacaggcggc
tggaacactgccaaggacgcctatagcagttttggcaacaaccgagggaagtctgcgttc
ttcaatgacagaggcaatgctaacagaggaaggtttgagcatggtggatttggtggtgga
ggaggagggggaggaaacagccgctgggtcgaggagtcccgagatgaaggagattggtcc
aaaccaacaccacgtaacgaacgccttgaacatgagttgttctctgccagcaacactggg
attaactttgagaaatatgatgacattcctgtcgaggccacaggacagaactgccctcac
cacatcgagagcttccaagatgtggacatgggtgagattatcatgggtaacattgctctg
agtcgctacaccagaccaacccctgtccagaaatatgccattcctattgtcaagtcaaag
cgagacctcatggcctgcgcacagacaggttctgggaagactgcggcgttccttctgccc
attctcagccagatctatactgaaggaccaggagaagctcttaacgcagctaaagcatct
ggacaggagaatggaaagtacgggcgtcgtaagcagtaccccatctcactggtattggct
ccaaccagagaactggcactgcagatatatgatgaagccagaaagttttcctaccggtcc
agagtgcgtccctgtgttgtgtatggaggagcagacattggccagcagataagagatctg
gagagaggctgccacttgctcgtggccactccgggaagactggtggacatgatggagagg
ggcaagattggactggactactgcaactacctggtcctggatgaggcagatcgtatgttg
gacatgggatttgaaccacagataagacgcatcgtcgaacaggacaccatgccgcataaa
ggcatccgacaaaccatgatgttcagcgcaacctttcctaaagagatccagatcctggct
agggatttcctggaagagtacatcttcctggcggtgggaagagttggttctacctcagag
aacataactcagaaagtagtgtgggtagaagagagcgataagaggtcattcctgctggac
ctgctcagtgctacaggtaaggactcgttgactctggtttttgtggagaccaagaaaggc
gcagatgccttggaggacttcctgtatcgggagggctacgcctgcaccagtatccacggc
gatcgctcccagcgagaccgagaggaggccctgagccagttcagatcaggaaaatgcccc
attctggtggccacagcggtagcagctcggggtctggacatatccaatgtgaaacatgtt
attaactttgacctacccagcgacatagaggagtatgtccaccgtattggacgtacagga
cgagttggaaacctgggactggccacatcattttttaatgataaaaatggcaacatcact
aaagacctgctggacatcctggtagaggccaaacaggaagttccctcttggcttgagagc
ctagcctatgaacaccagcataaaagcagcaacagaggacgctctaagagattctctggt
ggctttggagcccgtgattatcgccagactgccgccggaggcacctctggaggatttgga
ggacgtggaggtcgcaaccaggcaggacatggaggaacccgtggctttggaggaggtggt
tttggtaacttctacaccagtgacggctacggaggcaactactcacactctcaagttgac
tggcgtcacagtgttaatgcccatatgtgggagcttctggccaatcagaaatggggaaag
gacgacctgatgacgtccgtccaggtgtcttttacatga
DBGET
integrated database retrieval system
