Micropterus salmoides (largemouth bass): 119908983
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Entry
119908983 CDS
T07309
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
msam
Micropterus salmoides (largemouth bass)
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msam03041
]
119908983 (ddx1)
03016 Transfer RNA biogenesis [BR:
msam03016
]
119908983 (ddx1)
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119908983 (ddx1)
Spliceosome [BR:
msam03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119908983 (ddx1)
Transfer RNA biogenesis [BR:
msam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119908983 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
119908983
NCBI-ProteinID:
XP_038582908
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFTEMGVMPEIAQAAEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKRGRASIKTGGAIFSNWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTLGCYLDLDKGQISFSKNGNDLGLAFEIPQPVKNQPFFASCVLKNAELKF
NFGGEDFKHAPKSGFVALDQAPEGHTVKSSQTGSAKVSQVKASSNAPKALIIEPSKELAE
QTLNNVKQFSKFVENPKLRELLVIGGVAAKDQLAALDQGIDIVVGTPGRLDDLISTGKLN
LSQVRFLVLDECDGLLSAGYTDFITRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADRLWERLGKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKLLKGEYTVRAVKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKSHQF
SCVCLHGDRKPNERKNNLERFKRKEVRLLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTQLKENGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDDFDGKVTYGQRRALGGGNYKGHVDILAPTVQELASLES
EAQTSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgtttactgaaatgggggttatgcctgaaatcgcacaggctgcggaagagatg
gactggctgctacccactgacatccaggcagaatctattccccttattcttggtggagga
gatgtactgatggcagcagaaactggtagtggtaaaacaggtgcctttagtatcccagtg
atccagattgtgtatgagaccctgaaggaccagcaggagggcaagaggggcagagcctcc
atcaagactggaggagctattttcagcaattggcagatgaatccttatgatcgcagtcca
gcctttgcaattggtccagatggcttgtgctgccagagcagggagtttaaagagtggcat
ggctgtcgctctactaaaggtgtcaccaaagggaagtactactatgaggtgacctgccat
gaccagggtctgtgtcgcattggctggtccaccagccaggcagccctggacctgggaact
gataagtacgggtttggttttggtgggactggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcatgacactcttggatgctacttggatctagacaag
ggccaaatttccttctctaaaaatggtaatgacctgggtttggcttttgagatccctcaa
cctgtaaagaatcagcccttctttgcctcctgtgtgctcaagaatgcagagctgaagttc
aactttggaggagaagactttaaacatgcccctaagagtgggtttgttgccctggaccag
gcgccagagggtcacacagtcaaatcttctcagacaggcagtgccaaagtgagtcaggtg
aaagcatcatccaacgcacccaaagcactgatcatcgagccatctaaagaactggctgaa
caaactctaaacaatgtcaagcaattcagcaaatttgtagagaaccccaaactaagggaa
ctacttgtgattggtggtgtggctgccaaagatcagctggctgctctggatcaggggatt
gacattgtggtgggaacaccgggcagactggacgacctcatatccactgggaaacttaat
ttgtcccaagtccgctttctagtcctggatgagtgtgatggccttttgtccgcaggctat
acagattttatcaccaggatccataaccaaatccctcaggtcacttctgacggcaagaga
ttacaggtgattgtgtgttctgccacactgcattcgttcgacgtgaagaagttgtccgag
cgtatcatgcactttcccacttgggtggacctaaagggggaggactctgttcccgagact
gtccatcatgttgtcgtgcctgtcaatcctaaggccgatcgtctctgggagcgtcttggc
aagaaccacatccggactgatgaagtccatgccaaagacaacaccagaccaggagccaat
tctgcagaaatgtggtcagaagccatcaagttgctgaaaggcgagtacacagtgagggcc
gtcaaagagcataagatggatcaggccataatcttctgtcgcaccaagattgactgtgac
aacatggaacagtacttcattcaacaaggaggaggtccggacagtaaaagccaccagttt
tcctgcgtttgtctccacggtgatcgtaagcccaatgagcggaaaaataacttggagcgc
ttcaagagaaaagaagtgaggctcttgatctgcacagacgtagctgccagaggaattgac
atccacggagttccttatgtgattaacgtcactctgccagatgagaagcagaactatgtc
catcgtatcggcagagtcggaagagccgagagaatgggactggccatctccttggttgct
atggagaaggagaaggtgtggtaccacgtttgcccgaaccgaggcagaggctgctacaac
acccagctgaaggagaatggaggttgcaccatctggtacaacgagaaagagctcctgtca
gaaattgaggagcatctaaagtgcaccatcacccagtgtgagccagacatcaaagtacct
gtggatgactttgacggaaaagtcacctatgggcagcgcagagcattaggaggtggtaac
tataaaggtcatgtggatattctggccccgacagtccaggagcttgctagcttggagagt
gaagcccaaacttctttcctccacctgggatatatgccaaaccagctgttcagagccttc
tga
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