Marinobacter salinisoli: LPB19_14360
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Entry
LPB19_14360 CDS
T09746
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msan
Marinobacter salinisoli
Pathway
msan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPB19_14360 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msan03400
]
LPB19_14360 (mfd)
Enzymes [BR:
msan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPB19_14360 (mfd)
DNA repair and recombination proteins [BR:
msan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LPB19_14360 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QSP94349
LinkDB
All DBs
Position
3148682..3152197
Genome browser
AA seq
1171 aa
AA seq
DB search
MSRPSHSLIAPQAPKKAADHRTWGQLHGSSDALAICESAQAHQGLTLVITRSTDEAIRLE
QSMRFFLGLSTSDESETVTPDGLELLSLPDWETLPYDLFSPHQDITSRRIRTLHRLPSTR
HGVLVVPARTLMHRLAPVDYLQGNTLLLEVGQTLDIDAWRMQLEAAGYRHSENVYEHGEY
AVRGAILDIYPMGSNLPYRIDLFDNEIETLRTFDPETQRSIDRIERIELLPAYEFPWHKD
ARSGFRNRFFEYFPSADKDTPIYKDVSQAITSPGIEYYLPLFFDHTATLFDYLPGNTLVF
TADGLNDAVALFDAETRARFEDRRHDRMRPILPPTELFLQQDELFGHLKHFPRVTTTAQT
AEGTGAENCPTSSLPDVAMDGRAADPSGRLKRFLDEFTGRVLICAESSGRREALIENLGD
HQLKLTPENSWQAFLDDRDSTLAITIAPMEQGLVLAEEHIALITETALFGERVLQRRRRE
KPTQTDDAGYRDLSELRIGAPVVHIDHGVGRYKGLETITVEGESNEFLMLEYAGGSKLYV
PVSSLHLISRYAGTDEEHAPLHKLGTERWSNAKQKALEKIRDTAAELLDVYARREARKGF
SFEDPKEAYRAFAAGFPFEETPDQEVAIAAVTEDMTSERPMDRLVCGDVGFGKTEVAMRA
AFIATHSGKQVAVLVPTTLLAQQHYESFRDRFSDTAVNVELLSRFRSSGQTSKALTAIEE
GRADIVIGTHKLLQADIKFKNLGLVIIDEEHRFGVQQKEKLKALRAEVDMLTLTATPIPR
TLNMAMGHLRDLSIIATPPARRLSVKTFVRQRDDAMVKEAILREILRGGQVYFLHNDVAT
IEKTAEDLRRLIPEARVGVAHGQMRERELEQIMSDFYHKRFNVLVCTTIIETGIDIPSAN
TIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPRSITSDAKKRLDAISESQDLGA
GFMLATHDLEIRGAGELLGEGQSGQIESIGFSLYMQLLDEAVKAIRDGRTPNADLPLSHG
TEMNLRIPALIPEDYLPDVHNRLMLYKRIASVDSREALKELQVEMIDRFGLLPEPAKNLI
RQTELRLLADSLGIVQVDAGREWVRLEFGASTPVDPLVLVKKVQAAPDQFRLEGANSFRF
RLKDTSTSGKLDGISKTLGELAPAKAAEATS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgaccttcccattcgctgattgccccacaagcgcccaagaaagccgccgaccac
cgcacctgggggcaattacacggcagcagtgacgccctcgccatctgcgagagcgcccag
gcccatcaggggctaaccctcgtcattacccgcagcacagacgaagcgatccgcctcgaa
cagtccatgcgcttcttcctggggctgtcgacctctgacgaatccgaaacggtcacgccg
gacggccttgagttgctgtcgctgccggactgggaaaccctgccctacgatctgttctcg
ccgcaccaggacattacctcccggcgcatccggaccctgcatcgactgccatccacccgt
catggcgtgctggtggtgccggcacgcaccctgatgcatcgactggcgccagtggattat
ctgcaaggcaacaccctgctgctggaagtgggccagaccctggatattgacgcctggcgc
atgcaactggaggcggccggctatcgacatagcgaaaacgtctacgaacacggcgagtac
gccgtcaggggtgccatcctcgacatctaccccatggggtccaacctgccgtaccggatt
gacctgttcgacaatgaaatcgaaaccctgcgcacctttgacccggaaacccagcgctcc
atcgatcgtatcgaacgcatcgaactgctgccggcgtacgagtttccatggcacaaggac
gcgcggtcaggtttccgaaatcggttcttcgaatacttcccgagcgccgacaaggacact
cctatctataaagacgtttcacaggccatcacgtcgccgggcatcgaatactatttgccg
ctgtttttcgaccacacggccaccctgttcgattacctgccgggcaacaccctggtgttc
actgccgacggtctgaatgacgcagtggctttgttcgacgccgagacccgggcccgtttc
gaagaccgccgccacgatcggatgcgtccgatcctgcccccgacggagctcttccttcag
caggacgagctgttcgggcacctgaagcactttccccgcgtcaccacgacggcgcagacc
gccgagggcacgggcgcagaaaactgccccacgtccagcctgccggatgtcgcgatggac
ggccgtgctgccgacccctccggacgcctgaaacgcttcctggacgaattcaccgggcgg
gtgctgatctgcgccgaatcgtcgggacgccgggaggcattgatcgaaaacctcggcgac
catcagctcaagctcacgcccgagaacagctggcaagccttcctggatgacagagacagc
acactcgccattaccattgcccccatggagcaagggctcgtgcttgctgaagagcacatc
gccctgatcaccgaaaccgccctgtttggcgagcgcgtcttgcagcgccggcggcgggaa
aaacccacgcagaccgacgacgctggctaccgggacctgtcggaactgcggattggcgcc
ccggtggtccatatcgaccatggggttggtcgctataagggcctggaaaccatcaccgtg
gagggcgaatccaacgagttcctgatgctggagtatgccggtggctccaagctgtacgtt
cccgtgtccagcctgcacctgatctcccggtacgcgggcaccgacgaagagcacgcgcct
ctgcacaaactcggcaccgaacgctggagcaacgccaaacagaaggcgctggaaaaaatt
cgcgacaccgcagccgaattgctggacgtgtacgcgcgccgggaggccagaaaaggcttc
agctttgaagaccccaaagaggcctaccgggcctttgcggccggtttcccgttcgaggaa
accccggatcaggaagtggccattgccgccgtgaccgaagacatgaccagcgaacgcccg
atggatcgcctggtgtgcggtgatgtcggcttcggaaaaaccgaagtggccatgcgggct
gcattcattgccactcactcaggcaaacaggttgccgtgctggtacctaccaccctgctc
gcgcaacagcattacgaatccttccgggatcgcttttccgacacggcggtgaatgtggaa
ctgctcagccgctttcgcagcagcggccagaccagcaaggccctgacggccatcgaagaa
ggcagggccgacatagtaatcggcacgcacaagctgctccaggctgacatcaagttcaag
aacctcgggctggtgattatcgacgaggagcaccggttcggcgtgcaacagaaagaaaag
ctcaaggccctgcgcgccgaggtggacatgctaaccctgacagccacgcctatcccgcgc
acccttaacatggccatgggacaccttcgtgacctgtcgatcatcgccactccgccggcg
cgacgactgtcggtgaaaacctttgtgcgccagcgggatgatgccatggtgaaggaagcc
atcctgcgggaaatcctgcgcggcggtcaggtgtatttcctgcacaacgacgtcgccacc
atcgagaaaaccgcagaagaccttcgccgcctcatacccgaagcccgggttggtgtcgcc
cacggccagatgcgcgagcgtgagctcgaacagatcatgtcggatttttaccacaaacgc
ttcaatgtgctggtgtgcaccaccatcatcgaaaccggcatcgacatcccgagcgccaac
accatcatcattgaacgcgccgacaagtttggcctggcgcagttacaccagctccggggc
cgggtcggtcgatcgcatcaccaggcctacgcttacctgttgacccctccgccgcgctcg
atcacctcagacgcgaagaagcgtctggatgccatttccgagtcccaggacctgggcgcc
ggcttcatgctggctacccacgacctcgaaattcgcggcgccggtgaactgctgggcgag
ggacagagcggccagattgaaagcatcgggttcagtctgtacatgcaactgctggatgag
gctgtcaaagccatcagagacggccgcacccccaatgccgacctgcccctgagtcatggt
acggaaatgaatctgcgcatcccggcgctgattcccgaggattacctgcccgacgttcac
aaccggttgatgctgtacaagcgcattgccagcgtggacagccgggaggccctcaaagag
ctgcaagtcgaaatgatcgatcgctttggcctgctgccggaaccggcgaaaaacctgatc
cggcaaaccgagctcaggctcctggcagacagcctgggcatcgttcaggtcgatgcaggc
cgggaatgggtgcgcctggagttcggcgcgtcaacgccggtcgatccgctggtgctggtg
aaaaaagtccaggccgctccggatcagttccgactggagggcgccaacagcttccgtttt
cggctgaaggacacttctaccagtggtaaactcgacggcatttccaagacactgggcgag
ctggcccccgcgaaagccgcggaagccacctcatag
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integrated database retrieval system
