Mycobacteroides saopaulense: MYCSP_04450
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Entry
MYCSP_04450 CDS
T05445
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msao
Mycobacteroides saopaulense
Pathway
msao03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYCSP_04450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msao03400
]
MYCSP_04450
Enzymes [BR:
msao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYCSP_04450
DNA repair and recombination proteins [BR:
msao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MYCSP_04450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ALR10839
LinkDB
All DBs
Position
902520..904862
Genome browser
AA seq
780 aa
AA seq
DB search
MERISPVWPTGAAESATSGSGSTAFVRLTNAEKVLYPATGTAGPTTKADVFGYYTAIAPY
MLPHIAGRPVTRKRWPNGVDQPSFFEKDLAASAPDWLARRRIEHKSRYVTYPLIDTSVAL
AWIAQQAALEVHVPQWRFVGENPGPATRLVFDLDPGEGVSMPQLAQVARAVRDVLTDIGL
TTFPLTSGSKGLHLYVPLAQPVSSSGAVTVAKKIATQLEQAMPELVTATMTRQLREGKVF
VDWSQNSGSKTTVAPYSLRGRRVPTVAAPRTWEELDDPELRQLRFDEVLARVERDGDLLS
GLDDVTIVEDRLSTYRSMRDPARTPEPVPAVKPEAGQNNSFVIQEHHATALHYDFRLERD
GVLVSWAVPKNLPMEPSVNHLAVHTEDHPLEYGTFEGAIPKGEYGAGEVTIWDSGTYDTE
KFIDPRDDSGESKGEVIVTLHGKRITGRYALIRTNGKQWLAHRMKDQRSPGSMPTGLTPM
LPSTGSVAGLTADEWAFEGKWDGYRLILECDRGQLRALARSGRDVTGEFPALQRLAHELA
DHRVILDGEVVALDTKGLPSFSLLQNRTAGTETEFWAFDLLYLDGKSLLRNKYRDRRRLL
DVLGAGTESMTVPEPLDGDGASALAHSHEHGWEGVIAKRLDSLYVPGRTQSWIKAKNWSS
QEVVIGGWRQGKGGRSSGIGALLMGIPVEGGLRYAGRVGTGFTEKELATLKERLEPLHRK
ESPFSAPLSAIEAKDVQFVEPVLVAEVRYGDRTPAGILKHSSWRGLRTDKSVGDVELDLG
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggaacgcatatccccagtatggcccactggagccgcggagtcggcgacatccggctct
gggtcaaccgcgttcgtgcgcttgaccaatgcggaaaaggtgctgtacccggctaccggg
accgctggacccaccaccaaggcggatgttttcggctactacaccgcgatcgccccctac
atgctgccgcacatcgccgggcgaccggtaacgcgcaagcgttggcccaatggcgttgac
cagccatccttcttcgagaaggacctggccgcgtccgctcccgactggcttgcgcggcgg
cgcatcgagcacaagtcccgttacgtcacctatccgctgatagacacctcggtggcgttg
gcctggatagctcagcaggcggcattggaagtgcatgtgccgcagtggcggttcgtcggg
gaaaatcctggcccggcaacgcgattggtctttgacctggatcccggcgagggggtgagc
atgccgcagctggcacaggttgccagggcggtgcgcgatgtgctgaccgatatcggtttg
acgacgtttccgttgaccagtgggagcaaggggctgcacctgtatgtcccgctggcgcaa
ccggtcagctcatcgggtgcggtgaccgtcgcgaagaagatcgcgactcagctggaacag
gcgatgccggaattggtgaccgccacgatgactcggcagctacgtgaggggaaggtgttc
gtggactggagccagaacagcggctccaagaccaccgtcgccccctattccttgcgcggt
cgccgggtgccgacggttgccgcaccgcgtacctgggaggagttggatgatcccgagtta
cgtcagctgcgctttgacgaggtgctggcgcgcgtcgagcgcgacggcgacctgctgtcc
gggctcgacgatgtgacgatcgtcgaggacaggttgtccacgtatcgcagcatgcgcgat
cccgcgcgtacgccagaacccgttcccgccgtcaaaccggaagcagggcagaataattcg
tttgtcatccaggagcaccacgccaccgcgctgcactacgacttccggctggagcgcgat
ggtgtgctggtctcctgggccgttcccaagaatctgccgatggaaccgtcggtgaatcac
cttgcggtacacaccgaagatcaccccttggaatacggcaccttcgagggcgccattccc
aagggggagtacggcgcgggagaggtgaccatctgggactccggtacctacgacaccgag
aagttcatcgatccgcgcgatgactccggtgagtcgaagggggaggtcatcgtcaccctg
cacggcaagcgaatcacgggtcgatatgccctgattcgaaccaacggcaagcagtggctg
gcacaccggatgaaggaccagcggtcgcctggctcgatgcccaccggcctgacgccgatg
ctgccctccaccggatcggtggcgggtctgaccgccgacgagtgggcttttgaaggcaaa
tgggacggctaccgactcatcctcgaatgcgatcgcggtcagctgcgggcgctggcgcgc
agcggccgcgacgtcaccggcgagttccctgccctgcagcggctcgcgcacgaactggcc
gatcaccgcgtgattctggacggagaggtggtggcgttggatacgaaggggttgccgagc
ttctctctcttgcagaaccgtacggccggtaccgagacggagttttgggcgttcgatctg
ctgtatctcgatggaaaatccttattgcgcaacaagtaccgtgaccgccgccggctactg
gacgtgctgggcgcgggtaccgagtcgatgaccgttccggaaccgctggacggcgacggg
gcctcggcgctggcgcattcgcatgagcacggctgggagggggtcatcgcgaagaggctg
gattccctctacgttccgggtcgcacccagtcgtggatcaaggcgaagaactggagcagc
caagaggtcgtcatcggcggctggcgccaggggaagggcgggcgcagcagcgggatcgga
gccctgctcatggggataccggtcgagggcggactgcgttatgccggccgggtgggcacc
ggattcaccgagaaggaactggcaacgctcaaggagcggctggaaccgttgcaccgcaag
gaatcgccgttcagcgcaccgttatccgcgatcgaggccaaggatgtgcagttcgtcgag
ccggtgctggtggccgaggtgcgctacggggatcgcacgccggctggcatcctgaagcac
tccagttggcgcggcctgcgtaccgacaagtcagtgggcgacgtcgagctcgatctcggg
tag
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integrated database retrieval system
