Mycolicibacterium sarraceniae: MSAR_07940
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Entry
MSAR_07940 CDS
T07083
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msar
Mycolicibacterium sarraceniae
Pathway
msar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MSAR_07940 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msar03400
]
MSAR_07940 (ligD)
Enzymes [BR:
msar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MSAR_07940 (ligD)
DNA repair and recombination proteins [BR:
msar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MSAR_07940 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
BBY57658
UniProt:
A0A7I7SLL1
LinkDB
All DBs
Position
complement(753293..755584)
Genome browser
AA seq
763 aa
AA seq
DB search
MVNDVWPPGATKGPRVALTNADKVLYPATGTTKGDVFSYYTAIAEVMLPHIAGRPVTRKR
WPNGVDESSFFEKQLASSAPDWLARATVTHRSGSTAYPIIDSSTGLAWIAQQAALEVHVP
QWRFTSAGKPGPVTRLVFDLDPGEGVTMPQLGEVADAVRELMNDIGLTLYPLTSGSKGLH
LYAPLADPVSSNGAVTLARRVAQQLEQSMPTLVTATMTKSVRAGKVFLDWSQNNGSKTTI
APYSLRGRDHPTVAAPRTWEEIGDPKLRHLDHREVLARVAEHGDLLTGMDADAPAEDRLT
TYRSMRDSAKTPEPVPHATPAIGGNNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLP
DTPAVNHLAVRTEDHPLEYATFAGDIPKGEYGGGKVVIWDSGTYEAEKFRDSGADKGGEV
IVDLRGQRISGLYALIQTNGNQWLAHRMKEQSSPRLSDYSPMLATLGSVEKLTAAQYGFE
GKFDGYRLLVEIVRGELRLQSRSGRDLTADYPQLHSLAADLAEHDVILDGEVVALDADGV
PNFGEMQNRARATKIEFWAFDILRLDGRSLLKAKYRDRRKILETFAEGTDLIVPPLIDGD
GTDALRFSQKQKWEGVVAKKWDSTYQPGRRSSSWIKDKNWKTQEAVIGGWREGNGGRSGG
IGALLLGIPGEGGLRFIGRVGTGFSEKELARLKQILEPLHTDESPFAAPLPRLDAKGVSY
VRPELVGEVRYGEWTSDGRLRHPSWRGLRADKEPSEVEVELPG
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtggtgaatgacgtgtggccgccgggcgcgacgaagggaccgcgcgtcgcgctgaccaat
gccgacaaagtgctctacccggccaccggcaccaccaagggcgatgtcttctcctactac
accgcgatcgccgaggtgatgctgccgcatatcgcggggcgaccggtcacgcggaaacgc
tggccgaacggtgtcgacgagtcgtcgtttttcgaaaaacagctcgccagttcggcgccg
gactggcttgctcgcgcgaccgtcacgcaccgttcgggcagcaccgcgtacccgatcatc
gacagctcaacgggcctggcgtggatcgcgcagcaggccgcgctggaagtccatgtgccg
caatggcgtttcacctcggccggaaagcccggaccggtaacgcgattggtcttcgacctc
gaccccggcgagggggtgaccatgccccagctgggcgaggtcgccgacgccgtccgggag
ctgatgaacgatatcgggctgacgctgtatccactcaccagtggcagcaaggggctgcat
ctgtacgccccgttggccgatccagtcagcagtaacggggcggtgacactggcccgccgg
gtggctcagcagttggagcagagcatgcccacgctggttaccgccacgatgaccaagagt
gtccgggccggcaaggtctttctggactggagccagaacaacgggtcgaagaccacgatc
gcgccgtactcgctgcgcgggcgggaccatccgacggtcgccgcaccgcggacgtgggag
gagatcggcgatccgaagctgagacatctggaccaccgcgaggtgctggcccgggttgcc
gagcacggcgatctgctgaccggtatggacgccgacgcgcctgccgaagaccgtctgacc
acctaccggagcatgcgggactcagccaagacgccggagccggtgcctcatgccacgcct
gcgatcggtggcaacaacacgttcgtcatccaggaacaccacgcccgacggttgcactac
gacttccggctggaacgcgacggtgtgctggtgtcgtgggcggtgcccaagaacctgccg
gacaccccggcggtcaatcacctcgccgtgcgcaccgaggatcacccgctggagtacgcg
acgttcgccggcgacatcccgaagggcgaatacggcggcggcaaagtggtcatctgggat
tccgggacgtatgaggcggagaagttccgggactccggcgcggacaagggcggcgaggtg
atcgtcgacctgcgcggccagcgaatctcggggctttatgcgctgattcagaccaatggc
aatcaatggctggcgcaccggatgaaggagcagtcctcgccacggttgtcggattactcg
ccgatgctggcgaccttgggttcggtcgagaagctgaccgcggcgcaatacgggttcgag
ggcaagttcgacgggtaccggctcctggtggagatcgtgcgcggtgagttgcgactgcag
tcgcgtagcgggcgtgatctcaccgccgactatccgcaattgcattcgctggcagccgat
ctcgccgagcatgatgtcattctcgacggcgaggtggtggcgttggatgccgacggtgtg
ccgaacttcggtgagatgcagaatcgggcgcgcgccaccaagatcgagttctgggcgttc
gacatcttgcggctcgacgggcggtcgctgttgaaggcgaagtaccgcgaccggcgaaag
atattggaaaccttcgccgaaggaacggatttgatcgtgccaccactgatcgatggtgac
ggtacggacgctctcaggttctcccagaagcagaagtgggaaggcgtggtcgccaagaag
tgggactcgacctatcagccgggccggcgctcgtcgtcgtggatcaaggacaagaactgg
aagacgcaggaggccgtgatcggcggctggcgtgagggtaacggtggacgctccggtggg
atcggcgcgctgttgctcggcatccccggcgagggtggcctgcggttcatcggccgggtg
ggcaccggattctccgagaaggagctggcccggctcaagcaaatcctcgaaccgctgcac
accgacgaatctccctttgctgcaccgcttccccgactcgacgccaagggtgtcagctac
gtgcgcccagaattggtgggcgaggtgcgctacggcgaatggacgtccgacggccggctg
cgccacccgagctggcgcggcctgcgggccgacaaggagccctccgaggtggaggtcgag
ctgccgggttag
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