Methylocystis sp. SC2: BN69_1443
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Entry
BN69_1443 CDS
T02324
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msc
Methylocystis sp. SC2
Pathway
msc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN69_1443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msc03400
]
BN69_1443
Enzymes [BR:
msc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN69_1443
DNA repair and recombination proteins [BR:
msc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN69_1443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CCJ06894
UniProt:
J7Q463
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All DBs
Position
1513704..1516262
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AA seq
852 aa
AA seq
DB search
MSLADYRKKRDFAATREPKGRGVRKTGSSFVVQKHAARRLHYDLRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYRNFEGVIPEGQYGAGEVIVWDKGVWIPEGDPHKGYAKGH
LDFELRGKKLGGRWHLVRMARKPREKHDNWLLIKGDDEFARAPEDADILEELPRSVDTGR
TIGDVADGKRAPRPKKSALPKQSAASRLDKTTSPATPQAPAVDTDPSRLKGAKKAPPPNF
IAPMQASSGTAPASKEWIHEIKFDGYRVQARIEAGRVRLLSRSGLDWTKKFGDEVASALR
ALPLGAGLIDGEIVVETSSGASDFSALQADLSAGRTDRFVYWVFDLLYLDGYDLRGATLL
ERKRLLQRLLGAESDDKVRLSLHFEDSGAVVLAHACRLGLEGVVSKLRESPYRSGRVKSW
IKAKCFARQEFVVAGYTPSTVSRRAIGALVLGVYQNGVLCHVGRVGTGFTADMAHELFAK
LDPLRASSNPFGARLSADAARHVRYVRPELVAEVEFRGWTGDQNLRHASFRGLREDKDAR
DVVRESAPQVERVTAARAEQSVVRLTHPDRLYWPDQGVTKQGLADYYADIWRFIAPFIVN
RPLALLRCPNGVEGEKFFQKHAWKGIDPNIVLIDDPKGEEEPLLSIKDLNGLTALVQSGA
LEIHPWGSTASDWERPDVIIMDLDPGEQVAWESVIAAAEETRERLQDLGLAAFVKTSGGK
GLHVVAPVKPKAAWPEVKAFTKSIADAMTRDSPSKYVATITKSKRRGKILVDYLRNQRGA
TAVAPYSTRARPGAAVSMPLAWDELSPAIGPDYFTIAKTLARLESLQNDPWGDFRQAAAP
IETPKARKRRKT
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttgccgattaccgcaagaagcgcgactttgcggcgacgcgcgagccgaagggg
cgaggcgttcgaaagaccggcagcagcttcgtcgtccagaaacatgccgcaaggcggctg
cactacgatcttcgcctggagatggacggcgttttgaaaagttgggctgtgaccagaggc
ccaagtctcgtgcccggcgagaagcggcttgccgttcacgtcgaggaccaccctctcgac
tatcgcaatttcgaaggcgtcattccggaaggccaatatggcgccggcgaagtgatcgtg
tgggacaagggcgtctggattccggaaggcgacccgcataagggttacgccaagggccac
ctcgatttcgagctgcgcggcaagaagctcggcggacgttggcatctcgtgcgcatggcc
cgaaagccgcgggagaagcatgacaattggctgctcatcaagggcgatgacgaatttgcg
cgtgcgcccgaagatgcggacatacttgaggagttgccgcgctcggtcgacaccggacgc
acgatcggcgatgtcgcggatggcaagcgggcgccgcgcccgaagaaaagcgccctgccg
aagcagagcgccgcgtcgcgcttggataaaacgacttccccagcgacgccgcaagcgcct
gcggtggacaccgacccgtctcgtctcaagggcgcaaagaaggcgccgccgccgaatttt
attgcaccgatgcaggccagttccggcaccgcgccggcgagcaaggaatggattcacgaa
atcaaattcgacggctatcgcgtgcaggcgcgcatcgaggcgggacgcgtgcggctgctc
tcgcgcagcggcctcgactggacgaagaaatttggcgatgaggtcgcgtcggcgctgcgc
gccctgcctctcggcgccgggctcatcgacggcgagatcgtcgtcgagacgagctcaggc
gcgtcggatttctccgcgctgcaggccgatctgagcgccgggcggaccgatcgcttcgtc
tattgggtcttcgatcttctttacctcgacggctatgatctgcgcggcgcgaccttgctg
gaacgcaaacggctgctgcaacgactcttgggcgccgaaagcgacgataaggttcgctta
agtcttcactttgaggacagcggcgccgtcgtgctggcgcatgcctgccggctcggcctc
gaaggcgtggtgtcgaagctgcgggagtcgccctatcgttccggccgcgtgaagagctgg
ataaaggccaaatgcttcgcgcggcaggaattcgtcgtcgcgggctatacgccctcgacg
gtgtcgcgccgggcgatcggcgccctggtgcttggcgtctaccagaatggcgtcctttgc
catgttggccgcgtcggcacgggatttacggccgacatggcgcatgagcttttcgcgaag
ctcgatcccctgcgcgcctcctcgaatccttttggcgcgcggctcagcgcggatgcggcg
cgccatgtgcgctacgtgcggcccgaactggtggccgaggtcgaatttcgcggctggacg
ggcgatcaaaatcttcggcacgcctcctttcgcgggctgcgcgaagataaggacgcgcgc
gacgtcgtccgcgaaagcgcgccgcaggttgagcgggtgacagcggcgagagcggagcaa
agcgtcgtgaggctcacccatcccgatcggctctattggccggatcaaggcgtcaccaaa
cagggcctggcggattactacgccgacatctggcgctttatcgcgcccttcatcgtcaat
cgcccgctggcgctgctgcgctgccccaacggcgtcgagggagagaagttcttccagaaa
cacgcttggaaaggcatcgatccgaacatcgtgctcatcgacgatccgaaaggagaagaa
gagcccctgctcagcatcaaggacctcaacggcctgaccgcgctcgttcaatccggcgcc
ttggaaattcatccctggggctcgacggcgtctgactgggagcgccccgacgtcatcatc
atggatctcgatcccggcgaacaggtcgcgtgggagtcggtcattgcggccgcggaagaa
acgcgggagcggctccaagaccttgggctcgccgccttcgtgaaaacgtcaggcggaaag
gggcttcatgtggtggcgcccgtgaagcctaaagcggcgtggccagaggtgaaggctttc
accaaaagcatcgccgatgcgatgacgcgtgacagcccgagcaaatatgttgcgacgatc
acgaaatcgaagcgccgcggcaagatactcgtcgactatctgcgcaatcagcgcggcgcc
acggccgtcgcgccctactccacccgcgcccgtcccggcgccgccgtgtcgatgccgctc
gcctgggacgaacttagtccggcgatcggacctgactatttcacgatcgcgaaaaccctc
gcccgcctcgagtcgctgcagaacgatccctggggagactttcgtcaagcggcggcgccg
atcgaaacgccgaaggcgcgcaaaaggagaaaaacctag
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