Methanolobus sediminis: RE474_00355
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Entry
RE474_00355 CDS
T09570
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mseb
Methanolobus sediminis
Pathway
mseb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mseb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE474_00355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mseb03019
]
RE474_00355
Enzymes [BR:
mseb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RE474_00355
Messenger RNA biogenesis [BR:
mseb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RE474_00355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
P-loop_SecA
AAA_19
Shikimate_DH
Helicase_C_2
Phage_integrase
AAA_30
ERCC3_RAD25_C
AAA_11
DsrH
Motif
Other DBs
NCBI-ProteinID:
WMW25204
UniProt:
A0AA51UKT1
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All DBs
Position
complement(69871..71379)
Genome browser
AA seq
502 aa
AA seq
DB search
MSFDDLNLIYPLQRALKEEGYTTPTPIQQQSIPHLLGGKDMIGIAQTGTGKTASFILPIL
HNMSGTHKKTRRGSPRVLVLAPTRELAAQIGDSFSTYGKYTQFKHAVIFGGVGQAPQVKA
ISKGVDSLVATPGRLLDLVDQGHVNLSEVEYFVLDEADRMLDMGFVKDVYKIVEMLPYKR
QSLFFSATMSHDISKLAKKMLTSPVTVEVTPQATTVERIDQFIFFVDSEDKNELILQLLR
SKHLECVLVFTRTKHRANKVAQMLNKNKISADAIHGNKSQTHRTKALQDFRSGQLRVLVA
TDIAARGIDIDDISHVINYDLPNISESYVHRIGRTARAGADGTAFSFCAADERDFLRDIE
KLIRMEIEVAEHDYHSEKAMNATGDDAKPAPRQFGRPGGNPGNKRGQGRGKKGEDKGGRK
SSGNSQGKGNNAGNDTSSGKSAPKSAPKSAPNGSGSNKPKRSMKAKSVQSHNSGSNSSSS
RQNKSSQGKKSGSPPSKFGNRR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgatgatcttaatctaatttacccgcttcaacgcgcattaaaagaggaaggg
tacacaacccctacacccatacagcagcagtccataccacatcttcttggtggaaaggac
atgataggtattgcccagacaggtactggcaaaaccgcttcattcatattaccaattctg
cacaacatgtcaggtactcacaaaaagacacgaaggggaagtccacgcgtactggtactg
gcaccaacaagggaacttgcagcgcagattggggacagtttttcaacatacggaaaatac
actcagttcaaacatgcagtcatttttggaggcgtaggacaggctccccaagtaaaagct
atttcaaagggtgtagattcccttgtagcaacacccggacgcttacttgaccttgtggat
cagggacatgtaaatctctcagaggtcgagtatttcgtgcttgatgaggctgacaggatg
cttgacatgggatttgtcaaagatgtctataaaatagttgaaatgctgccatacaagaga
cagtcacttttcttctcggcaacaatgtcacatgatatttcaaagcttgcaaagaaaatg
ctgacaagtcctgtaacagttgaagtcactcctcaggcaacaactgtagagcgcatagac
cagttcatattctttgttgattctgaggacaagaacgagttgatacttcagctcctcaga
agtaaacatttggaatgtgtcctagtatttaccagaacaaaacacagggctaacaaagtc
gcccagatgcttaacaagaacaagatctctgctgatgcaattcatggcaacaagtcccag
acacacaggacaaaagctcttcaggacttcaggtcaggacagcttcgtgtgctggtggca
acggatattgcagcccgtggaatcgatattgatgacatttcccacgtaatcaactacgac
ctgccaaacatctctgaaagctatgtccaccgtatcggccgtacagcaagagcaggagcc
gacggaacagcattctcattctgtgctgctgatgagcgagatttcctccgtgatatagag
aagctcatcagaatggaaattgaagttgcagagcatgactaccattccgagaaagctatg
aatgccacaggtgacgatgcaaaacctgcaccaagacaatttggaagaccagggggaaac
ccaggtaataaaagaggccagggaagaggtaaaaaaggtgaagacaaaggcggcaggaaa
agcagtggcaacagtcaaggcaagggtaacaatgcaggcaatgacaccagctccggaaaa
tctgcacctaaatccgcacctaaatctgcaccaaatggttcaggcagtaacaagccaaaa
aggagcatgaaggcaaaatctgtccaatcccacaattcaggaagcaatagtagttcttcc
aggcagaataagtctagtcaaggtaaaaagagtggatcaccaccttccaaatttggaaac
aggagatga
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