Marinobacterium sediminicola: LN244_08995
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Entry
LN244_08995 CDS
T07998
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LN244_08995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msec03400
]
LN244_08995 (mfd)
Enzymes [BR:
msec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LN244_08995 (mfd)
DNA repair and recombination proteins [BR:
msec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LN244_08995 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ULG67859
LinkDB
All DBs
Position
1937759..1941208
Genome browser
AA seq
1149 aa
AA seq
DB search
MSAVFSIPTPKGPGDQKRLGQVIGSSTGLLIEQISRQHTGMILLISQDMESAERLMQEVR
FFCGDRFPATLLPDWETLPYDSFSPHQDIISSRIQTLHQLPDQQRGVLVVPASTLMHRLP
PVSFVSANALFLETGQRLDSIALRQRFTDAGYHAVDTVYEHGEFAIRGAIIDLFPMGADQ
PLRIDLFDDEIDTIRTFDPETQRSIDKVERIRLLPAREFPFDQNAITRFKQRWRERFDVD
HTRCPIYQDVSSGLTPPGVEYYAPLFFDDTATLFDYLPDSTLVLHEQALKTAADQFCKDA
RSRYDERSGDLQRPVLSPDELFLSTEELFTQLKNHPVMRLSQDPEELKPGRNNLPCLAPA
ELGSNDSQSPLAGLQGAIKEHPLPTLICAESAGRREALIEHARKAGLKLTECTDWDNFVT
ERPSLAITTFPLELGLTIDGELRIVTESQLFGRQIFQRRRREKEQIDADQAIRHLSELSI
GAPVVHIDHGVGRYLGLQTINVDNQAAEFLVLEYADQAKLYVPVSSLHLIGRYSGASDES
APLHKLGTEQWNKARRKAAEKVRDSAAELLDIYARRAARKGFSFDCTEEEYLRFSASFPF
EETPDQANAINAVVNDMRAPSPMDRLVCGDVGFGKTEVAMRAAFIAIQSGKQVAVLVPTT
LLAQQHFENFRDRFADWPVEVELISRFKSAKQQQSTIEALGEGKVDILIGTHKLLQGDIR
FSDLGLLIIDEEHRFGVQQKERLKSLRSEVDILTLTATPIPRTLNMAMSGIRDLSIIATP
PARRLSIKTFVRQSERPMIKEAILRELLRGGQVYYLHNEVKTIDKVAAEISDLVPEARVA
IGHGQMRERELEQVMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIDRADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPPKAMTQDALKRLEAIGQSSTLGAGFTLATHDLEIRGAGELL
GEEQSGQMQSVGFSLYMEMLDQAIKSIQEGKTPDLDKPLHHGCEINLNLPALIPEDYIPD
VHNRLILYKRIANAENDSALDELQVEMIDRFGLLPEPTKNLLRLTHIKLRAETLGIVKLD
AGDKSGRIEFEAEPNVDPMTLITMIQRQPDRFRLDGGNILRFTQPMEKVASRFEAVERLL
TQLSPKENS
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgcggtattcagcatccctacccccaaaggcccgggtgatcaaaagcgacttgga
caggttatcggcagttcgactggactattgatcgaacagatcagtcgacagcataccggg
atgattctgctgatcagccaggatatggaaagcgccgaacgtctcatgcaagaggttcgc
tttttttgtggcgaccgctttcccgccacactgctgcctgactgggaaacactgccttac
gacagcttctcccctcaccaggacattatttccagccgcattcaaaccttacatcaactg
ccagaccaacagcgtggtgtactggttgttcctgcttctaccctgatgcacagactgccg
ccagtgagtttcgtcagtgctaatgcactattccttgaaacaggacaacggctcgacagt
atcgctctgcgtcaacgctttaccgatgctggctatcacgcagtcgacacagtatacgag
cacggtgaatttgccatacgcggggccatcattgatctcttcccaatgggagccgatcag
cctctacgcattgacttgtttgatgacgaaatcgacaccattcgaacctttgatccggaa
acgcaacgatcaatcgacaaggttgagcgcatccgcctgctgcccgccagggaatttccg
tttgatcagaacgccattacacgtttcaaacagcgctggcgtgaacgttttgatgtcgat
catacccgctgcccaatctaccaagacgtttccagcggcctgacaccaccgggcgtcgag
tactacgcccccttgtttttcgatgatactgcaaccctgtttgactacctgccggacagc
actctggtactccatgaacaggcattgaaaaccgctgcagatcaattctgcaaagatgcc
cgctcacggtacgatgagcgcagcggggaccttcagcgccccgtacttagccctgatgaa
cttttcctgtcgacagaggaactgtttactcagttgaaaaaccatccggtcatgcgcctc
agccaagacccagaggagctgaaacccggacgaaacaatctgccctgccttgcgccagca
gaacttggcagcaacgatagtcagtctcctctggcaggacttcaaggggccatcaaggaa
catcctctgccaacactgatttgtgctgaatcagccggtcgcagggaagcattgattgaa
cacgcccgcaaggccggactcaagctcaccgagtgcaccgactgggacaatttcgttacc
gagcgcccttctcttgccatcaccaccttcccacttgagctgggcctgacgatcgatgga
gagctgcgcattgttaccgaaagccagctgttcggccgacagatcttccagcgtcgccgg
cgcgagaaagagcagattgatgccgaccaggcgattcggcatctttccgagctgagcatt
ggcgcacctgttgttcatatcgatcacggtgtcggccgctatctggggctacagaccatc
aacgttgacaatcaggctgcagaatttctggttctggagtatgcagaccaggccaaactg
tacgtcccggtttcatcactgcacctgattggtcgctattccggggccagcgacgaatcc
gctcccctgcacaagcttggtaccgaacaatggaacaaggccagacgcaaagcggctgaa
aaagtgcgcgactccgctgccgaattgctggatatctacgcccgtcgcgcggctcgcaag
ggcttcagtttcgattgtaccgaagaggaatatcttcgattctccgccagctttccattt
gaagaaacgcctgatcaggccaacgccatcaatgcggtggtcaatgacatgcgagcacct
tccccaatggatcgactggtctgtggtgatgtcggcttcggcaaaaccgaagttgccatg
cgcgcagctttcatcgcgattcagagtggcaaacaggttgccgttctggttcccacgacc
cttctggcgcagcagcattttgaaaactttcgtgaccgcttcgcagactggcctgttgag
gttgagttgatctcacgcttcaagagcgccaagcagcaacagtccaccatagaggcactg
ggcgaaggcaaggtggatatactgatcggcacccacaaactgctgcagggtgatattcgt
ttcagcgacctgggcctgcttatcatcgatgaagaacaccggtttggtgttcagcaaaaa
gaacgactcaagtcacttcgctcagaagtcgatatcttgaccctgaccgccacgccaatt
ccccgtacactcaacatggccatgtcggggattcgagatctgtcaattatcgccacgcca
ccggcgcgacggctgtcgatcaaaacctttgtccgccaaagcgaaaggccgatgatcaag
gaagccatactgcgtgagcttcttcgtggcggtcaggtttattacctgcacaatgaggtc
aagaccattgacaaggttgccgctgagatcagtgatctggtaccagaggcccgcgtcgcc
atcggccacggacaaatgcgtgaacgcgaacttgagcaagtgatgagtgacttttatcac
aagcgctttaatgttctggtctgcacgaccattattgaaaccggcattgatgtccccagc
gccaacaccatcattattgaccgtgcagataagttcggcctcgctcagctgcaccagcta
cgcggacgtgttggccgctcacaccaccaggcctacgcctacttactgacaccgccgcca
aaagccatgacacaggatgcactcaaacgcctggaggccattggtcagtccagcaccctt
ggtgccggctttacactcgccacacacgacctcgaaattcgcggcgccggcgaactgctt
ggtgaagaacaaagcggtcagatgcaaagcgttggtttcagtctttacatggaaatgctg
gaccaggcgatcaagtccatccaggaaggcaaaacgccagacctggacaagcccctgcat
catggctgcgagatcaatctcaacctgcccgcactgatccctgaagactacatcccggat
gtgcacaatcggctgatcctctataagcgcatagccaacgctgaaaacgactctgcgctc
gacgagcttcaagttgaaatgattgatcgttttggcctgctgcccgagccgactaaaaac
ctgcttcgactcacgcacatcaaactgcgtgccgaaacacttggcatcgtaaaactggat
gccggtgacaaatccgggcgcatcgagtttgaagccgaaccaaacgtagaccccatgaca
ttgatcaccatgattcagcgccagccggaccgcttccgtctggacggaggcaacatattg
cgttttactcagccaatggagaaagtcgcatcccgttttgaagcggtcgagcgcctgctg
acccaactgtcacccaaggagaattcgtaa
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integrated database retrieval system
