Mycolicibacterium sediminis: MSEDJ_59020
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Entry
MSEDJ_59020 CDS
T07629
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MSEDJ_59020 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msei03400
]
MSEDJ_59020 (ligD_2)
Enzymes [BR:
msei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MSEDJ_59020 (ligD_2)
DNA repair and recombination proteins [BR:
msei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MSEDJ_59020 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Thr_synth_N
Motif
Other DBs
NCBI-ProteinID:
BBY31806
UniProt:
A0A7I7R0W5
LinkDB
All DBs
Position
complement(6131542..6133809)
Genome browser
AA seq
755 aa
AA seq
DB search
MVDRCGRVKLTNPDKVLYPATGTTKAEIFDYYVAIADAMIPHIAGRPVTRKRWPNGVGQP
DFFEKQLASSAPDWLDRGSVTHKSGTTTYPVLDSREGLAWVAQQASLEVHVPQWRFLDPT
TPGPATRIVFDLDPGEDVTFRQLCEVAHEVRGFITDIGLTTYPLTSGSKGLHLYVPLAEP
VSSQGASVLAKRIAVQLEKQMPKQVTATMTKSLRAGKVFLDWSQNSAAKTTIAPYSMRGR
DEPTVAAPRTWEEIEDPDLRHLRFDEVLERVERDGDLLDGLDEPAPLPDKLTTYRSMRDS
SKTPEPVPRASPATGNDDTFVIQEHHATRLHYDFRLERHGVLVSWAVPKNLPETPSVNHL
AVHTEDHPLEYATFEGTIPKGEYGGGEVTVWDSGTYETEKFNDNPPDGPAKGGEVIVTLH
GSKVEGRYALIQTGGKQWLAHRMKEQPQPIPDDVKPMLAAHGSVARLTKVVWAFEGKWDG
YRLLVDADHGALRLRSRSGRDVTAEYPQLRALAADLADHHVVLDGEAVALDANGVPNFGL
MQNRATSTRVEFWAFDVLALDGRSLLRAKYSDRRRILETLAEAGGLIVPDQLPGDGPDAL
EHARSQRWEGVVAKKRDSTYQPGRRSQSWIKDKLWLTQEVVIGGWRAGEGGRTSGIGALL
MGIPSDDGLVFAGRVGTGFTDRDLANLKKTLAPLEAEESPFTKRLTGPDAKGVTFVRPEL
VGEVRFSERTSDGRLRQPSWRGLRPDKSPGEVVWE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggtggatcgctgcggccgggtcaagctgaccaaccccgacaaggtgctctatcccgcc
acgggcaccaccaaggccgagatcttcgactactacgtggcgatcgccgacgcgatgatc
ccgcacatcgcgggacgacccgtcacccgcaagcgctggcccaacggcgtcggtcagccc
gacttcttcgagaagcagctcgcatcgtcggcgccggactggctcgaccgcggctcggtg
acgcacaagtccggcaccaccacctatcccgtcctcgacagccgcgaggggctggcgtgg
gtggcacagcaggcgtcgctggaggtgcacgtcccgcagtggaggttcctcgatcccacg
acgccggggcccgcgacgcgcatcgtgttcgacctggacccgggggaggacgtgacgttc
cgccagctgtgcgaggtcgcccacgaggtccgcgggttcatcaccgacatcgggttgacg
acgtatccgctgaccagtgggagcaagggcttgcacctctacgtgccgctggccgagccg
gtcagctcgcagggcgcgtcggtgctggccaagcggatcgcggtgcaactcgagaagcag
atgcccaagcaggtcaccgcgaccatgaccaagagtctgcgggcgggcaaggtgttcctc
gactggagccagaacagcgccgcgaagacgaccatcgcgccgtactcgatgcgcggtcgc
gacgagccgacggtcgccgcgccgcgcacgtgggaggagatcgaggaccccgatctgcgg
cacctccgcttcgacgaggtgctcgagcgggtcgaacgcgacggcgatctgctcgacggc
ctcgacgagccggcgccgctgccggacaagctcaccacctatcggagcatgcgcgactcg
tcgaagacgcccgaaccggtgccgcgtgcctcgccggccaccgggaacgacgacaccttc
gtcatccaggagcaccacgccacccgcctgcactacgacttccggctggagcgccacggc
gtcctggtgtcgtgggccgtcccgaagaacctgcccgagacgccgtcggtgaaccacctc
gccgtgcacaccgaggaccatccgctcgagtacgcgacgttcgaggggacgattcccaag
ggggagtacggcggtggcgaggtgaccgtctgggactccggcacctacgagaccgagaag
ttcaacgacaacccgcccgacgggccggccaagggcggcgaggtgatcgtcacgctgcac
gggtccaaggtcgagggccgctacgcgctcatccagaccggcggcaaacaatggctcgcg
caccgcatgaaggagcaaccgcagccgatccccgacgacgtcaaacccatgctggcggcg
catggttcggtggcgaggctgacgaaggtggtgtgggcgttcgagggcaagtgggacggc
taccggctgctcgtcgacgccgatcacggcgccctgcggctgcggtcgcgcagcgggcgc
gacgtgaccgccgagtatccgcagctgcgcgcgctcgccgccgatctggccgaccaccac
gtcgtcctggacggtgaggcggtggctctcgacgcgaacggggtgccgaacttcgggctc
atgcagaaccgtgccacgtccacccgcgtcgagttctgggcgttcgacgtgcttgcgctc
gacggtcgaagcctgttgcgcgccaagtactccgaccggcgccggatcctggagacactc
gccgaggcgggcgggttgatcgtgcccgaccagctgcccggcgacggtcccgatgcgctg
gagcatgcacgcagccaacgctgggagggggtggtcgcgaagaagcgcgactccacctac
cagccgggccgccgctcgcagtcctggatcaaggacaagctatggctcacacaggaagtc
gttattggcgggtggcgtgccggcgagggcggacggaccagcgggatcggcgcgctgctg
atggggatcccgtcggacgacggcctggtgttcgcgggccgcgtcggcaccgggttcacc
gatagggacctcgccaacctgaagaagacgctcgcgcccttggaggccgaggagagcccg
ttcacgaagcgcctcaccgggccggacgcgaagggcgtcaccttcgtgcgccccgaactg
gtgggggaggtccggttcagcgagcggacgtcagacggccggctgcgccagccgagctgg
cgggggctgcggccggacaagtcgccgggcgaggttgtgtgggaatag
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