Mycobacterium seoulense: MSEO_27810
Help
Entry
MSEO_27810 CDS
T07134
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mseo
Mycobacterium seoulense
Pathway
mseo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mseo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSEO_27810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mseo03400
]
MSEO_27810 (mfd)
Enzymes [BR:
mseo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSEO_27810 (mfd)
DNA repair and recombination proteins [BR:
mseo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MSEO_27810 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
DUF1474
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BBY02282
UniProt:
A0A7I7P2I8
LinkDB
All DBs
Position
complement(3024248..3027907)
Genome browser
AA seq
1219 aa
AA seq
DB search
MTAPGPARPEPPIAGLVELALTAPTFQQLIESAAERPAELHLVGPASARLFVASALARLG
PLLVVTATGRAADDLTAELRGVFGDAVAAFPSWETLPHERLSPGVDTVGARLTVLRRLAH
PDDARLGPPLRVVVTAVRSLLQPMTPQLGLVEPVTLSVGQEIAFSDVIARLVELAYTRVD
MVGRRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFAVADQRSIPEIEVETVIAV
ACRELLLTDDVRKRAAALAARHSGAEPAITGSVTDMLAKLGEGIAVDGMEALLPVLRPGE
HVLLTDQLAAGTPVLLCDPEKVRTRAADLIKTGSEFLEASWSVAALGTDAPVDVAQFGGS
GFAELDEVHAAAARSGHPWWTLSQLSDEAAVELEIRAAPSARGHQHDIDGIFAMLRAHVS
TGGYAAVVAPGVGTAHRVVERLADSDTPAAMLEPDAADTTLKPGVVSVLKGPLHDGVVIP
GANLVVITETDLTGSRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTER
TVGGARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWANTKT
KARRAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKAD
MEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAG
FPVTVKGLSRFTDNAESRAVIEGLADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFG
VEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDD
KQVAAALRRELLRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVAHGQMPEERLERTVQ
GFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFL
YPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLY
VRLVGEAVEAYRAAADGQTVTTAEEPRDVRIDLPVDAHLPPDYIASDRLRLEAYRRLAAA
ADDAAVDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRLSPMTL
PDSAQVRLKRMYPAASYRATTSTVQVPIPRAGGVGAARIRDVELVQMVANLVTALQGKAQ
KDVGITSSGPATSEERQAR
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcctgctcgcccagaacccccgatcgcggggctcgtcgaattggcg
ctcaccgcgccgaccttccagcagttgatcgagagcgcggcggagcgaccggccgagctt
cacctggtgggtccagccagcgcacgcttgttcgtcgccagtgcgctggcgcggttgggg
cctctgttggtagtcaccgcgacggggcgtgcagccgatgacctgaccgccgaactgcgc
ggcgtcttcggcgacgccgtggcggcctttccgtcctgggagacgctgccgcacgagcgg
ctgtcgccgggcgtcgacaccgtcggcgcccggttgacggtgctgcgccggctggcccat
cccgacgatgcgcggttgggtccgccgttgcgggtggtggtgacggcggtgcgctcgctg
ctgcagccgatgacgccgcagctgggcctggtcgagccggtcacgttgagcgtcggccag
gagatcgccttctccgacgtcatcgcccggctggtcgagctggcctacacccgggtggac
atggtgggccggcgcggcgagttcgccgtccgcggcggcattctcgacgtgttcccgccc
accgccgagcatccggtgcgcgtcgagttctggggcgacgaggtcagcgagatgcggatg
ttcgctgtcgccgaccagcgctccatacccgagatcgaggtcgagacggtgatcgcggtg
gcctgccgcgagctcctgctgaccgacgacgtgcggaaacgggccgccgcgctggccgcc
cggcattccggcgccgagcccgccatcaccggcagcgtcaccgacatgctggccaagctg
ggcgaaggcatcgcggtcgacggcatggaggcgctgctgccggtgctgcggcccggcgaa
cacgtgctgctgaccgaccaactggccgccggcacgccggtgttgctgtgtgaccccgaa
aaggtgcgcacccgggccgccgacctgatcaagaccggcagcgaattcctcgaggcctcg
tggtcggtcgcggcgttgggcaccgacgcgcccgtcgacgtggcgcagttcggtggatcg
gggttcgccgagctggacgaggtgcacgccgcggcggcgcggtcgggtcatccctggtgg
acgctgagccagttgtccgacgaggcggcggtggagctggagatccgggcggcgccgtcg
gcccgcgggcatcaacacgacatcgacggcatcttcgcgatgctgcgcgcccacgtctcg
accggtggctacgccgcggtggtcgcgcccggcgtcgggaccgcccaccgggtggtcgag
cggctcgccgattccgacacccccgccgccatgctggaaccggacgcggcggacacgaca
ctcaagccgggggtcgtcagcgtgctcaagggcccgctgcacgacggcgtcgtcatcccc
ggcgccaacctggtcgttatcaccgagaccgacctgaccggcagccgggcgaccgccgtc
gagggcaagcggctggcggccaagcggcgcaacaccgtcgacccgttggcgctgacggcc
ggcgacctggtggtgcacgaccagcacggcatcggccggttcgtcgagatgaccgagcgc
accgtcggcggtgcccggcgcgagtacctggtgctggagtacgcctcgagcaagcggggg
ggcgggtcggacaagctgtacgtcccgatggactccctggaccagttgtcccgctatgtc
ggcgggcaggcgccggcgctgagcaagctgggcggcagcgactgggccaacaccaagacc
aaggcccgccgcgccgtgcgcgagatcgccggcgagctcgtcgcgctgtacgccaaacgc
caggccagccccgggcacgcgttcgcgccggacacgccctggcaggccgaaatggaggac
gcgttcggcttcaccgagaccgtcgaccagctcaccgccatcaccgaggtcaaggccgac
atggagaagccgatcccgatggaccgggtgatctgcggcgacgtcggctacggcaagaca
gagatcgcggttcgggccgcgttcaaggcggtgcaggacggcaagcaggtcgccgtgctg
gtgcccaccacgctgctggccgaccagcacctgcagaccttcaccgaccggatggccggc
ttcccggtgaccgtcaaggggctgtcccggttcaccgacaacgcggagtcgcgcgccgtg
atcgagggcctggccgacgggtcggtggacgtcgtgatcggcacgcaccggctgctgcag
accggggtgcggtggaaggacctgggactggtcgtcgtcgacgaggagcagcggttcggc
gtcgaacacaaggagcacatcaagtcgctgcgcacccacgtcgacgtgctgacgatgagc
gccaccccgatcccgcgcacgctggagatgagcctggccgggatccgcgagatgtcgacg
atcctgacgccgcccgaggaacgctatcccgtgctgacctacgtcggcccacaggacgac
aagcaggtcgccgccgcgctgcggcgcgagttgctgcgcgacggccaggcgttctacgtg
cacaaccgggtcagttccatcgaccgggccgcggcccgggtccgcgagctggtcccggag
gcgcgggtggtcgtcgcgcacgggcagatgcccgaggagcggctggagcgcaccgtgcag
gggttctggaaccgcgagtacgacatcctggtgtgcaccacgatcgtggagaccgggctg
gacatctccaacgccaacacgctgatcgtcgagcgcgccgacaccttcgggctctcgcag
ctgcaccagctgcgcggcagggtcggccgcagccgcgagcgcggttacgcctacttcctg
tacccgccgcacgcgccgctgaccgagacggcctacgaccggttggcgaccatcgcgcag
aacaacgagctgggcgcgggcatggccgtggcgctcaaggacctcgagatccgcggggcg
ggcaacgtgctgggcatcgagcagtccgggcacgtcgccggggtcggcttcgacctgtac
gtgcggctcgtgggcgaggcggtggaggcctaccgggccgcggccgacgggcagacggtg
accaccgccgaggagcccagggacgtgcgcatcgacctgccggtggacgcccacctgccg
ccggactacatcgccagcgaccggctgcggctggaggcctaccggcggctggccgcggcg
gcggacgacgcggccgtcgacgccgtggtggaggaactcgtcgaccgctacggcgcgcta
cccgaaccggcactgcgcctggtcgcggtcgcgcggttgcggctgctgtgccgcgccgcg
ggcatcaccgaggtgtcggcgccgtcggcggcgaccgtgcggttgtcgcccatgacgctg
cccgattcggcccaggtgcggctcaagcggatgtatccggcggcgagctaccgcgccacg
acgtccaccgtgcaggtgcccattccgcgggcgggcggggtcggcgcggcacgcatccgc
gacgtggaattggtgcagatggtggccaatctggtgacggcgctgcaaggtaaagcccag
aaggacgttggtataacgagctcaggacctgcgaccagtgaggagcgacaagcgcgatga
DBGET
integrated database retrieval system
