Mycobacterium seoulense: MSEO_29040
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Entry
MSEO_29040 CDS
T07134
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mseo
Mycobacterium seoulense
Pathway
mseo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mseo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MSEO_29040 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mseo03400
]
MSEO_29040 (ligD)
Enzymes [BR:
mseo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MSEO_29040 (ligD)
DNA repair and recombination proteins [BR:
mseo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MSEO_29040 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBY02405
UniProt:
A0A7I7P0X0
LinkDB
All DBs
Position
complement(3164309..3166567)
Genome browser
AA seq
752 aa
AA seq
DB search
MAPRVKLTNADKVLYPASGTTKRDVFDYYTQIAAVMIPHIAGRPATRKRWPNGVEQGAFF
EKQLASSAPDWLPRASVTHRSGTTTYPIIDSPEGLAWIAQQAALEVHVPQWRFVAQWTRR
HAEELKPGPATRLVFDLDPGEGVTMAQLAEVAHAVRDLIEGIGLTLFPLTSGSKGLHLYA
PLAEPVSSKGATVLAKRVAQQLEKSMPTLVTSTMTRSLRAGKIFLDWSQNNGSKTTIAPY
SLRGREHPTVAAPRTWEEIEDPASLRQLRYDEVLARVARDGDLLAALDKDVAVPDRLTKY
RSMRDASKTPEPVPRTKPATGKGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPET
TSVNHLAVHTEDHPLEYATFEGNIPTGEYGAGKVIIWDSGTYEAEKFREDEVIVNLHGSK
VSGRYALIQTKGEQWLAHRMKDQKVFDFDGIAPMLATHGSVAACKAGQWAFEGKWDGYRL
LVEIDHGDLRVRSRRGREVTGEYPQLRALAADLADHHVVLDGEAVVLDSSGVPSFHAMQN
RGRGSRVEFWAFDLLYLDGRSLLRARYHDRRKLLETLAGGSDLIVPELLPGDGKQALEHS
AEHGWEGVVAKKRDSTYQPGRRSASWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSLLMGI
PADGGLRFAGRVGTGFTERDLASLKKTLAPLHTDQSPFTPPLPRSEARGVTYVRPVLVGE
VRYSEWTPDDRLRQSSWRGLRPDKEPSEVVRE
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgcgggtgaagctgaccaacgccgacaaggtgctctaccccgccagcgggacc
acgaagcgggacgtcttcgactattacacccagatcgccgcggtgatgatcccgcacatc
gcggggcgcccggccacccgcaagcgctggcccaacggcgtcgagcagggtgccttcttc
gagaagcagctggcctcgtcggcgccggactggttgccacgcgccagtgtcacgcaccgg
tccggcaccacgacgtatccgatcatcgacagccccgaggggctggcctggatcgcgcaa
caggccgcgctggaagtgcatgtgccgcagtggcggttcgtcgcccagtggacgcggcgc
catgccgaagaactcaagcccggcccggcgactcgactggtgttcgacctcgatcccggt
gagggggtgaccatggcgcagctggccgaggtggcccacgccgtccgcgacctcatcgaa
gggatcgggctgaccctgttcccgctcaccagcgggagcaagggcctgcacctctacgcg
ccgctggctgagccggtgagcagcaagggtgcgacggtgttggcgaaacgggttgcccag
caactggaaaagtcgatgcccacgctggtcacgtccaccatgacccgcagcctgcgggcg
ggaaagatttttctcgactggagccagaacaacggatccaagacgaccatcgcaccgtat
tccctgcgcgggcgcgaacacccgacggtcgcggcgccgcgcacctgggaggagatcgag
gacccggcgtcgctgcgccaactgcgttacgacgaggtgctggcccgagtggcgcgcgac
ggcgatctgctggcggccctggacaaggacgtcgccgtccccgaccggctgaccaagtac
cgcagcatgcgcgacgcatcgaaaaccccggagccggtgccgcggacgaaacctgctacg
ggtaaaggcaattcgttcgtcatccaggagcatcacgcccggcggctacactacgacttc
cggctggagcgcgacggcgtgctggtgtcgtgggcggtgccgaagaacctgcccgaaacc
acatcggtgaaccacctcgcggtccacaccgaggatcatccgctggaatacgcgacgttc
gagggcaacatccccacaggggagtacggggccgggaaggtgatcatctgggattccgga
acgtatgaggcggagaagtttcgcgaggacgaggtcatcgtcaacctgcacggcagcaag
gtgtccggccgctatgcgctgatccaaaccaagggcgaacagtggctggcgcaccggatg
aaggaccagaaggtcttcgatttcgacgggatagcgcccatgctcgccacccacggctcg
gtcgcggcgtgcaaggccggccaatgggcgttcgaaggcaaatgggacggctaccggctg
ctggtcgagatcgaccatggagacttgcgggtccggtcccggcgcggccgggaggtcacc
ggcgaatacccccaattacgggcgctggcagccgatctcgccgaccatcacgtggtcctc
gacggggaggcggtcgtgctggacagctccggcgtgccgagctttcacgcgatgcagaac
cgcggccgcggcagccgcgtggagttctgggcgttcgacctgctgtatctcgacggccgt
tcgctgctgcgggcccgctaccacgaccgccgaaagctgttggaaacgctggccggcggt
agcgacctcatcgtccccgagctgctgcccggcgacgggaaacaggcgctggagcactcc
gccgagcacggctgggagggcgtggtcgccaagaaacgcgactccacctatcagccgggc
cggcgctcggcgtcttggatcaaggacaagcattggaacacccaggaagtcgtcatcggt
ggttggaaggccggggagggcggacgcagcagcggcatcggctcgctgctgatgggcatc
cccgccgacggtggtctgcgcttcgccgggcgggtcggtaccgggttcaccgaacgtgac
ctggcgagcctgaagaagacgctggcgccgctgcacaccgaccaatctccattcactcca
ccgcttccgcgcagcgaggccaggggggtgacgtacgtccggccggtgctggtgggcgaa
gtgcgctacagcgagtggaccccggatgaccgtttgcgccaatcgagttggcgtgggctg
cggccggacaaggaaccgagtgaggtggtgcgcgaatga
DBGET
integrated database retrieval system
