Manduca sexta (tobacco hornworm): 115444095
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Entry
115444095 CDS
T07401
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
msex
Manduca sexta (tobacco hornworm)
Pathway
msex03022
Basal transcription factors
msex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msex00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115444095
09124 Replication and repair
03420 Nucleotide excision repair
115444095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msex03021
]
115444095
03400 DNA repair and recombination proteins [BR:
msex03400
]
115444095
Transcription machinery [BR:
msex03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115444095
DNA repair and recombination proteins [BR:
msex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115444095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
115444095
NCBI-ProteinID:
XP_030025606
LinkDB
All DBs
Position
16:complement(1784944..1790025)
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AA seq
481 aa
AA seq
DB search
MSESSKSKSSLNLNPSPTLQCKDLHEYLKSRTPQFLETLYNYPTICLAVYRELPELARHF
VIRLLFVEQPVPQAVVTSWVSQTFAKEQSKACEALSELSVWQEAPIPGGMPGWMLAQSFK
KNLKVALLGGGRPWSMSSSLEPDGKARDVAFLDSYALERWECVLHYMVGSAQTEGISADA
VRILLHAGLMTRDAEDGSAVITRAGFQFLLLSTAKQVWLFLQHYLHTAEKRSLSAAECLA
FLYQLSFSTLGKDYSTEGMSNNMLVFLQHLREFGLVYQRKRKAGRFYPTRLALNIACAHD
SVIPAPVPAAGQPQQQGYIIVETNYRVYAYTQTNLQVALLGLFTELLYRFPNLVVGVLTR
ESVRQALRGGITAQQIIRYLEQHSHMQMLKSETGGIRSSSVLPPTVVDQIKLWESERNRF
TYTEGVVYNQFLSQADFVVLRDYAKQQGVLTWQNERSRTMVVTRAGHDDVKKFWKRYSKT
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtcgtcgaaatcaaaatcgtcattgaatttaaacccgtcgccgacattacaa
tgcaaagacctacatgaatatctaaaaagtagaactccacaattcctagagacattatac
aattaccccacaatatgtttggctgtttacagggaactaccggagttggcgcggcacttc
gtcattcggctactgttcgttgagcagcctgtgccccaggctgtagtcacgtcttgggtg
tcacagacttttgccaaggaacaatccaaagcatgtgaggctctatcagagttatcagtc
tggcaggaagctccaatacctggtggaatgccagggtggatgttggcacagtccttcaaa
aagaatttaaaggttgcattgcttggtggtggtcggccatggagcatgtcgtcatctcta
gaacccgacgggaaggcgcgagacgtcgcgttcctggactcgtatgcgctggagcgttgg
gagtgtgtgctacactacatggtgggcagtgcgcagaccgaaggtatcagtgctgatgct
gtgcggatactactacatgctggactgatgaccagggatgctgaggatggttcggcagtg
ataacgcgagcgggtttccagttcctactacttagcactgccaaacaggtgtggttgttc
cttcagcactatctccacacggctgagaagcgaagtctcagtgcggccgagtgcctcgcg
tttctgtatcaacttagctttagtacacttggcaaggactacagcacagaaggcatgagc
aacaatatgctcgtatttctgcagcatctaagagagtttggacttgtttatcaaagaaaa
cgtaaagctggtcgtttctaccccacgcggttggcgctgaacattgcgtgtgcgcacgac
agcgtcatccctgcgccggtccccgccgccggacagccgcaacaacagggatacatcata
gtggagacaaactacagggtgtatgcgtacacgcaaaccaatcttcaggtcgcattgctt
gggttgttcactgagcttttgtacaggttcccaaacttggtagtgggcgtgctgacgcga
gagtcggtgcgacaggctctgcgcggcggcatcacggcgcagcagatcatacggtactta
gaacagcactcgcatatgcagatgttaaaatcggagacgggcgggataaggtcgtcgtca
gtgctgccccctacagttgtggatcagatcaagttgtgggagagcgagcggaatagattt
acttatactgaaggagtcgtctacaatcagttcctatctcaggcggacttcgtggtacta
cgcgactacgccaaacagcaaggagtattaacatggcagaacgaacgtagtcgtactatg
gtggtcacacgggcggggcacgatgacgtcaagaagttctggaagcgttactctaaaacg
tcatag
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