KEGG   Microbacterium schleiferi: IT882_10230
Entry
IT882_10230       CDS       T07058                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
msf  Microbacterium schleiferi
Pathway
msf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:msf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IT882_10230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:msf03400]
    IT882_10230
Enzymes [BR:msf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IT882_10230
DNA repair and recombination proteins [BR:msf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IT882_10230
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QPE03681
UniProt: A0A7S8RGW0
LinkDB
Position
2113761..2116187
AA seq 808 aa
MAGREQTVQVQGHRLRLTNLDKVLYPSTGTTKGEVIDYYSRIAPAILPALAGRPVTRKRW
PDGVGDAEHPGMSFFTKDLERGAPEWLARMPIEHSSGTKTYPLIDSQAALVWLGQVASLE
LHVPQWRFSGDGTPANPDRLVLDLDPGPEVGLAECAEVARLVRDILLGMSLEAVPVTSGS
KGIHLYAPLPGTLTSGGASNLARELARALETDHPDLVVSSMSKAARPGKVFLDWSQNNGK
KTTISPYSLRGREHPTVAAPRTWEELAEPDLRQLLFTEVLERAAADIARFLGQTGPTPDA
GSAPLDRYREKRDAARTPEPVPERGAPPEARADEAAPRFVVQEHHASRLHFDLRLERDGV
LVSWAVPRGIPETPDRNNLAVMTEDHPLEYLTFHGTIPKGQYGAGTMTVWDTGTYETEKW
RADEIIVRTHGTPGGAMDDARFALIRTEGDGEKSQWLLHRMKDAAPGTTPAPPTVRRSRE
TPDHHGSLAPMLATPATPGLAAGAITRWGGEPWVEMKWDGIRAVGSWDGTALTLRARSGN
DLTATYPDLQDAALGTAPCVVDGEIVALDERGRPSFPLLQKRMNLAKPTEITREVGRTPV
RYYLFDLLEIDGQDATALPLADRRALLERLADGAADRIAVPPVFDDLDATLAAAREADLE
GVVVKNPASRYRPGERSPDWVKIKLTRTQDVVIGGIRPGQGGRSGTIGSLLVGIPGPDGL
HYAGRVGTGFTDASLTVLGRLLAPLGTDEMPFVGVPAADARDAIWVRPELVGEVEFAEFT
PGGILRHARWRGLRPDRSPDDVVLEDTP
NT seq 2427 nt   +upstreamnt  +downstreamnt
atggcgggccgggagcagactgtgcaggttcaggggcaccggctgcgcctcacaaacctc
gacaaggtgctgtatccgagcaccggcacgaccaagggcgaggtcatcgactactacagc
cgtatcgcccccgcgatcctgcctgcgcttgccgggcgccccgtcacgcgtaagcggtgg
cctgacggtgtgggcgacgcggagcatccgggaatgtcgttcttcacgaaagacctcgag
cgcggcgcacccgagtggctggcccggatgccgatcgagcactcgtcgggaacgaagacg
tacccgctcatcgactcacaggcggctctcgtctggctcggccaggtcgcaagcctggaa
ctgcacgttccccaatggcgcttttctggggacggaactcccgcgaacccggatcggcta
gtactcgacctcgacccgggacccgaggtcggcctcgctgagtgcgccgaggtcgcccgg
ctcgtgcgcgacatcctgctcgggatgtcgctggaagctgtgccggtgacaagcggcagc
aagggcatccacctctatgcgccgctgccgggcacactcaccagcggtggtgcctcgaac
cttgcacgagaactcgcccgcgcgctcgaaaccgatcatccggacctcgtcgtcagttcg
atgtcgaaggcggctcggccgggcaaggtgtttctggactggagccagaacaacggcaag
aagacgacgatcagcccgtactcactgcgcggccgggagcatcccacggtcgcagcacca
cggacgtgggaggaactcgccgagccggacctccgccagctgctgttcaccgaggtgctt
gagcgcgccgcagcagacatcgcccgcttcctcggccagaccggaccgacgcccgatgcc
ggctccgcaccgctggaccggtaccgcgagaagcgggatgcggcgcgcacccccgaaccg
gtgccggagcgcggcgcgccgcccgaggcgcgcgccgacgaggccgccccgcggttcgtc
gtgcaggagcaccatgcgtcgcgcctgcacttcgacctgcggctcgagcgcgacggcgtg
ctggtgagctgggcggtcccccgcggcatccctgaaacacccgatcgcaacaacctggcg
gtgatgaccgaggaccaccccctcgagtacctcacctttcacggcacgatcccgaagggt
cagtacggcgcgggcaccatgacggtgtgggacaccgggacgtacgagaccgagaagtgg
cgagcagacgagatcatcgtccgcacccacgggactcccggcggtgccatggatgacgcg
cgcttcgccctcatccgcaccgagggcgacggcgagaagtcgcagtggctgctgcaccgg
atgaaggacgcggcgcctggcacgacccccgccccgcccacggtgcgtcgctcccgcgaa
accccagaccatcatgggagcctcgccccgatgctcgcgacgcccgcgactccggggctg
gccgcgggcgcgatcacccgctggggcggggagccgtgggtggagatgaagtgggacggc
atccgcgcggtcggaagctgggacggcaccgcactcaccctgcgggcccgcagcggaaac
gacctcacagcgacgtaccccgatctgcaggatgccgccctcggcacggcgccgtgcgtc
gtcgacggcgagatcgtcgctctcgatgaacggggccggccgagcttcccgctgctgcag
aagcggatgaacctcgcgaagcccaccgagatcacccgggaagtcggccgcaccccagtg
cggtactacctgttcgatctgctcgagatcgatgggcaggacgcgacggctctcccgctc
gccgaccgccgcgccctgctggagcgcctcgccgacggcgcggccgatcggatcgccgtg
cccccggtcttcgatgacctggatgcgaccctcgctgcggcgcgcgaggccgacctcgaa
ggcgtcgtcgtcaagaaccctgcgtcgcgctaccggccgggcgagcgctcgccggactgg
gtgaagatcaagctcacccgcacccaggatgtcgtgatcggcggcatccggcccggccaa
ggcgggaggtcgggcacgatcggatcgctcctggtcggcatcccgggcccggacggcctg
cactatgcgggccgcgtgggaacaggcttcacggatgcctccctcaccgtgctcggccgc
ctcctcgccccgctcgggactgacgagatgccgtttgtcggagtccccgcggcggatgct
cgggacgcgatctgggtgaggccggagctggtcggcgaggtcgagttcgcggagttcacg
cccggcggtatcttgcggcacgcccgctggcgcgggcttcgtcccgatcgctcccccgac
gacgtggtgctcgaggacacgccctag

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