Microbacterium schleiferi: IT882_10230
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Entry
IT882_10230 CDS
T07058
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msf
Microbacterium schleiferi
Pathway
msf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IT882_10230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msf03400
]
IT882_10230
Enzymes [BR:
msf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IT882_10230
DNA repair and recombination proteins [BR:
msf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IT882_10230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QPE03681
UniProt:
A0A7S8RGW0
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All DBs
Position
2113761..2116187
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AA seq
808 aa
AA seq
DB search
MAGREQTVQVQGHRLRLTNLDKVLYPSTGTTKGEVIDYYSRIAPAILPALAGRPVTRKRW
PDGVGDAEHPGMSFFTKDLERGAPEWLARMPIEHSSGTKTYPLIDSQAALVWLGQVASLE
LHVPQWRFSGDGTPANPDRLVLDLDPGPEVGLAECAEVARLVRDILLGMSLEAVPVTSGS
KGIHLYAPLPGTLTSGGASNLARELARALETDHPDLVVSSMSKAARPGKVFLDWSQNNGK
KTTISPYSLRGREHPTVAAPRTWEELAEPDLRQLLFTEVLERAAADIARFLGQTGPTPDA
GSAPLDRYREKRDAARTPEPVPERGAPPEARADEAAPRFVVQEHHASRLHFDLRLERDGV
LVSWAVPRGIPETPDRNNLAVMTEDHPLEYLTFHGTIPKGQYGAGTMTVWDTGTYETEKW
RADEIIVRTHGTPGGAMDDARFALIRTEGDGEKSQWLLHRMKDAAPGTTPAPPTVRRSRE
TPDHHGSLAPMLATPATPGLAAGAITRWGGEPWVEMKWDGIRAVGSWDGTALTLRARSGN
DLTATYPDLQDAALGTAPCVVDGEIVALDERGRPSFPLLQKRMNLAKPTEITREVGRTPV
RYYLFDLLEIDGQDATALPLADRRALLERLADGAADRIAVPPVFDDLDATLAAAREADLE
GVVVKNPASRYRPGERSPDWVKIKLTRTQDVVIGGIRPGQGGRSGTIGSLLVGIPGPDGL
HYAGRVGTGFTDASLTVLGRLLAPLGTDEMPFVGVPAADARDAIWVRPELVGEVEFAEFT
PGGILRHARWRGLRPDRSPDDVVLEDTP
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggcgggccgggagcagactgtgcaggttcaggggcaccggctgcgcctcacaaacctc
gacaaggtgctgtatccgagcaccggcacgaccaagggcgaggtcatcgactactacagc
cgtatcgcccccgcgatcctgcctgcgcttgccgggcgccccgtcacgcgtaagcggtgg
cctgacggtgtgggcgacgcggagcatccgggaatgtcgttcttcacgaaagacctcgag
cgcggcgcacccgagtggctggcccggatgccgatcgagcactcgtcgggaacgaagacg
tacccgctcatcgactcacaggcggctctcgtctggctcggccaggtcgcaagcctggaa
ctgcacgttccccaatggcgcttttctggggacggaactcccgcgaacccggatcggcta
gtactcgacctcgacccgggacccgaggtcggcctcgctgagtgcgccgaggtcgcccgg
ctcgtgcgcgacatcctgctcgggatgtcgctggaagctgtgccggtgacaagcggcagc
aagggcatccacctctatgcgccgctgccgggcacactcaccagcggtggtgcctcgaac
cttgcacgagaactcgcccgcgcgctcgaaaccgatcatccggacctcgtcgtcagttcg
atgtcgaaggcggctcggccgggcaaggtgtttctggactggagccagaacaacggcaag
aagacgacgatcagcccgtactcactgcgcggccgggagcatcccacggtcgcagcacca
cggacgtgggaggaactcgccgagccggacctccgccagctgctgttcaccgaggtgctt
gagcgcgccgcagcagacatcgcccgcttcctcggccagaccggaccgacgcccgatgcc
ggctccgcaccgctggaccggtaccgcgagaagcgggatgcggcgcgcacccccgaaccg
gtgccggagcgcggcgcgccgcccgaggcgcgcgccgacgaggccgccccgcggttcgtc
gtgcaggagcaccatgcgtcgcgcctgcacttcgacctgcggctcgagcgcgacggcgtg
ctggtgagctgggcggtcccccgcggcatccctgaaacacccgatcgcaacaacctggcg
gtgatgaccgaggaccaccccctcgagtacctcacctttcacggcacgatcccgaagggt
cagtacggcgcgggcaccatgacggtgtgggacaccgggacgtacgagaccgagaagtgg
cgagcagacgagatcatcgtccgcacccacgggactcccggcggtgccatggatgacgcg
cgcttcgccctcatccgcaccgagggcgacggcgagaagtcgcagtggctgctgcaccgg
atgaaggacgcggcgcctggcacgacccccgccccgcccacggtgcgtcgctcccgcgaa
accccagaccatcatgggagcctcgccccgatgctcgcgacgcccgcgactccggggctg
gccgcgggcgcgatcacccgctggggcggggagccgtgggtggagatgaagtgggacggc
atccgcgcggtcggaagctgggacggcaccgcactcaccctgcgggcccgcagcggaaac
gacctcacagcgacgtaccccgatctgcaggatgccgccctcggcacggcgccgtgcgtc
gtcgacggcgagatcgtcgctctcgatgaacggggccggccgagcttcccgctgctgcag
aagcggatgaacctcgcgaagcccaccgagatcacccgggaagtcggccgcaccccagtg
cggtactacctgttcgatctgctcgagatcgatgggcaggacgcgacggctctcccgctc
gccgaccgccgcgccctgctggagcgcctcgccgacggcgcggccgatcggatcgccgtg
cccccggtcttcgatgacctggatgcgaccctcgctgcggcgcgcgaggccgacctcgaa
ggcgtcgtcgtcaagaaccctgcgtcgcgctaccggccgggcgagcgctcgccggactgg
gtgaagatcaagctcacccgcacccaggatgtcgtgatcggcggcatccggcccggccaa
ggcgggaggtcgggcacgatcggatcgctcctggtcggcatcccgggcccggacggcctg
cactatgcgggccgcgtgggaacaggcttcacggatgcctccctcaccgtgctcggccgc
ctcctcgccccgctcgggactgacgagatgccgtttgtcggagtccccgcggcggatgct
cgggacgcgatctgggtgaggccggagctggtcggcgaggtcgagttcgcggagttcacg
cccggcggtatcttgcggcacgcccgctggcgcgggcttcgtcccgatcgctcccccgac
gacgtggtgctcgaggacacgccctag
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