Mycolicibacterium smegmatis MC2 155: MSMEI_1288
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Entry
MSMEI_1288 CDS
T02191
Symbol
recD
Name
(GenBank) Exonuclease V (Alpha chain) recD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
msg
Mycolicibacterium smegmatis MC2 155
Pathway
msg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MSMEI_1288 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msg03400
]
MSMEI_1288 (recD)
Enzymes [BR:
msg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MSMEI_1288 (recD)
DNA repair and recombination proteins [BR:
msg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MSMEI_1288 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
Helicase_RecD
UvrD-helicase
SH3_13
AAA_16
nSTAND3
AAA_28
PhoH
NTPase_1
T2SSE
Mg_chelatase
Herpes_Helicase
AAA_29
TrwB_AAD_bind
CbiA
AAA_5
SRP54
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AFP37764
UniProt:
A0QS28
LinkDB
All DBs
Position
complement(1422038..1423702)
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AA seq
554 aa
AA seq
DB search
MSLLEAFAEILEPADVHVAQRLTVLADEPDASVELAVALAVRALRGGSVCVDLRSVAGQV
ELPDLPWPDPDAWLAALAASPLLGQPPVLRLFGDLLYLDRYWLEEQQVCDDVLALVSARP
GGAVPDVSRLFGAGFEEQRAAAKVALSQGLTVLTGGPGTGKTTTVARLLALLAEQAALAG
KPSPRIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRF
RHHRANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADL
VEGLGSRGVAELKTSHRFGESIGALASAIRTGDADAALAVLAAGGEHIEWVHEDPVEQLR
EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP
LWGSWYVGRPILVTANDYGLKLYNGDTGVVVATPDGMRAVIGDAGTFATGRLTDVETMHA
MTIHKSQGSQADEVTVLLPSEDSRLLTRELFYTAVTRAKTRVRVVGAEAEVRAAIERQAV
RATGLRKRLRPAGV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctgctcgaagcgttcgccgagatcctcgaacccgccgatgtgcatgtggcgcaa
cggctgaccgtgctggccgacgaaccggacgcatcggtcgagctcgcggtcgccctcgcg
gtgcgggcgctgcgcggcggctcggtgtgtgtggacctgcggtcggtggccgggcaggtc
gaattaccggatctgccgtggccggatcccgacgcgtggctggcggcgctggcggccagt
cccctgctcggtcagccacccgtgctgcgcctgttcggcgatctgctgtatctggaccgc
tactggctcgaagagcagcaggtgtgcgacgacgtgctcgcgttggtgtcggcgcggccc
ggtggtgcggtgccggatgtgtcgagactgttcggcgcgggcttcgaggagcagcgggcg
gcggcgaaggttgcgctctcgcaagggctgacggtgttgacgggtgggccgggcaccggc
aagacgactaccgtggcacggctgttggcgttgctggccgagcaggccgcgctcgcaggc
aagccgtcgccgcgcatcgcgttggcggccccgacgggcaaggcggccgcaaggttgcag
gaggccgtgcagctcgagatcgatcagctcgacctcatcgagcgcaggcggttgaccggg
ctgcacgccaccacgctgcaccggctgctcggtccgcggcccgatacgtcgtcgcggttc
cgtcatcaccgcgccaaccggttgccgcacgacgtgatcgtcgtcgacgagacgtcgatg
gtgtcgctgaccatgatggcgcggttgttggaggccgtgcgcccgcagacacggctggtg
ctcgtcggcgatcccgatcagttggcgtcggtcgaggccggcgcggtgctggcggacctg
gtcgagggtcttggttcgcgcggtgtcgcggagctgaagacgtcgcaccggttcggtgag
tcgatcggcgcgctggcgtcggccatccgcacgggtgacgccgacgcagccctggcggtt
ctcgcggccggtggtgagcacatcgagtgggtgcacgaggatccggtcgagcagttgcgc
gaagtggtggtgccgcacgcgatgcggttgcgtcaggccgcgatcctcggtgaccagcgt
gaggcgctcgcgacgctcgacgagcaccggttgttgtgcgcgcaccgacgggggccggcc
ggcgtcgaccactggaaccggcaggtgcagcgctggctcggtgaggaaaccggtgaaccc
ctgtggggttcgtggtacgtcgggcgtccgatcctggtgaccgccaacgactatgggctc
aagctctacaacggggacaccggcgtcgtcgtcgccacaccggacgggatgcgggctgtg
atcggcgatgcgggaacgttcgcgacgggtcgcctcaccgacgtcgagaccatgcacgcc
atgacgatccacaagtcgcagggcagccaggccgacgaggtgacggtgctgctgccgtcg
gaggattcgcggttgttgacgcgggagttgttctacaccgcggtcacccgcgccaagacg
cgggtgcgcgtcgtgggcgcggaagcggaagtgcgcgctgcgatagaacggcaggcggtg
cgcgccaccggactacgcaagcggctacggccggcgggggtttag
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