Mycolicibacterium smegmatis MC2 155: MSMEI_5419
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Entry
MSMEI_5419 CDS
T02191
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msg
Mycolicibacterium smegmatis MC2 155
Pathway
msg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MSMEI_5419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msg03400
]
MSMEI_5419
Enzymes [BR:
msg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MSMEI_5419
DNA repair and recombination proteins [BR:
msg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MSMEI_5419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Thr_synth_N
DUF6052
Motif
Other DBs
NCBI-ProteinID:
AFP41860
UniProt:
A0R3R7
LinkDB
All DBs
Position
complement(5658437..5660725)
Genome browser
AA seq
762 aa
AA seq
DB search
MARHPWGMERYERVRLTNPDKVLYPATGTTKAEVFDYYLSIAQVMVPHIAGRPVTRKRWP
NGVAEEAFFEKQLASSAPSWLERGSITHKSGTTTYPIINTREGLAWVAQQASLEVHVPQW
RFEDGDQGPATRIVFDLDPGEGVTMTQLCEIAHEVRALMTDLDLETYPLTSGSKGLHLYV
PLAEPISSRGASVLARRVAQQLEQAMPKLVTATMTKSLRAGKVFLDWSQNNAAKTTIAPY
SLRGRDHPTVAAPRTWDEIADPELRHLRFDEVLDRLDEYGDLLAPLDADAPIADKLTTYR
SMRDASKTPEPVPKEIPKTGNNDKFVIQEHHARRLHYDLRLERDGVLVSFAVPKNLPETT
AENRLAVHTEDHPIEYLAFHGSIPKGEYGAGDMVIWDSGSYETEKFRVPEELDNPDDSHG
EIIVTLHGEKVDGRYALIQTKGKNWLAHRMKDQKNARPEDFAPMLATEGSVAKYKAKQWA
FEGKWDGYRVIIDADHGQLQIRSRTGREVTGEYPQFKALAADLAEHHVVLDGEAVALDES
GVPSFGQMQNRARSTRVEFWAFDILWLDGRSLLRAKYSDRRKILEALADGGGLIVPDQLP
GDGPEAMEHVRKKRFEGVVAKKWDSTYQPGRRSSSWIKDKIWNTQEVVIGGWRQGEGGRS
SGIGALVLGIPGPEGLQFVGRVGTGFTEKELSKLKDMLKPLHTDESPFNAPLPKVDARGV
TFVRPELVGEVRYSERTSDGRLRQPSWRGLRPDKTPDEVVWE
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaggcatccttgggggatggagcgctatgagcgggttcgcctgacgaatcctgac
aaggtgctctatcccgccacgggcaccaccaaggcagaggttttcgactactacctcagc
atcgcgcaggtgatggtgccgcacatcgccgggcggccggtgacgcgcaaacgctggccc
aacggcgtcgcggaagaggcgttcttcgagaagcagttggcgtcgtcggccccgagctgg
ctggaacgtggctcgatcacgcacaaatcgggcaccacgacgtacccgatcatcaacacg
cgtgagggtctggcgtgggtcgcgcagcaggcctcgctggaagtgcatgtgccgcaatgg
cgcttcgaggacggggatcagggtccggccacgcggatcgtgttcgacctcgatccgggc
gaaggcgtcacgatgacgcaattgtgcgagatcgcccacgaggtgcgcgcgctgatgacc
gacctcgatctcgagacgtacccgctcaccagcggcagcaagggcctgcacctgtatgtg
ccactggccgagccgatcagctcccgcggcgcgtcggtgctcgcgcgccgggttgcccag
cagctggagcaggccatgccgaagctggtcaccgccaccatgaccaagagcctgcgggct
ggcaaggtgttcctggattggagccaaaacaacgcggccaagactacgatcgcgccgtac
tcgctgcgggggcgcgaccatccgacggtcgccgcgccgcgtacgtgggacgagatcgcc
gatccggaactgcggcatctgcggttcgacgaggtactggaccggctcgacgaatacggt
gatctactggcaccgctcgacgccgacgcaccgatcgccgacaagctcacgacctaccgc
agcatgcgcgacgcgtcgaagacgcccgagccggtgccgaaagagattccgaagaccggt
aacaacgacaagttcgtcatccaggagcaccacgcccggcggctgcactatgacctgcga
ctcgagcgtgacggtgttctcgtgagcttcgcggtgcccaagaacctgcccgagaccacc
gcggagaaccggctcgcggtgcacaccgaggaccaccccatcgagtacctggcgtttcac
ggctcgattcccaagggcgagtacggcgccggtgacatggtgatctgggattcgggtagc
tacgagaccgagaagttccgtgtgcccgaggaactcgacaaccctgacgacagtcacggc
gagatcatcgtcacgctgcacggcgagaaggtcgacggcaggtatgcgttgatccagacc
aagggcaagaactggctcgcgcaccgcatgaaggaccagaagaacgcgcggccagaggat
ttcgcgcccatgctggccaccgagggttccgtcgcgaagtacaaggccaagcagtgggcg
ttcgagggcaaatgggacggctaccgcgtgatcatcgacgccgatcacggccagttgcag
atacgttcgcgcaccggtcgtgaggtgaccggtgagtacccccaattcaaggcgctggca
gccgatctcgccgaacatcatgtggtgctcgacggcgaggcggtcgcgttggacgagtca
ggtgtgcccagtttcggccagatgcagaaccgtgcccgctccacgcgggtcgagttctgg
gccttcgacatcctgtggctcgacggccggtcgctgttgcgggccaagtactccgaccgg
cgcaagatcctggaagcgctggccgacggtggcggactgatcgtcccggaccagttgccc
ggcgacgggcccgaggccatggagcacgtgcgcaagaaacgcttcgagggtgtcgtcgcc
aagaaatgggactcgacgtatcaaccaggtcgacggtcgtcatcgtggatcaaggacaag
atctggaacacccaggaggtcgtgatcggcggttggcgtcagggtgagggtggacggtcc
agcggtatcggcgcactcgtgctcggcattccggggcccgaaggcctgcagttcgtggga
cgcgtcggaacggggttcaccgagaaagaactgagcaagctcaaggacatgctgaagccg
ctgcacaccgacgagtcccccttcaacgcgccactgcccaaggtcgacgcccgcggcgtc
accttcgtgcgcccggaactggtgggggaggtgcgctacagcgagcgcacatcggacggc
cggttgcgtcaaccgagttggcgtgggctgcgccccgacaagacacccgatgaggttgtg
tgggaatag
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