Mycobacterium shigaense: MSG_03991
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Entry
MSG_03991 CDS
T05717
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mshg
Mycobacterium shigaense
Pathway
mshg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mshg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSG_03991 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mshg03400
]
MSG_03991 (mfd)
Enzymes [BR:
mshg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSG_03991 (mfd)
DNA repair and recombination proteins [BR:
mshg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MSG_03991 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAX94115
UniProt:
A0A1Z4EMC6
LinkDB
All DBs
Position
complement(4267923..4271597)
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AA seq
1224 aa
AA seq
DB search
MTAPGPALPQTPIAGLVDLALTAPTFQKLTATAAARPAELHLVGPASARLFVASALVGQG
PLLVVTATGREADDLSAELRGVFGDAVAAFPSWETLPHERLSPGVDTVGTRLMVLRRLAH
PDDARLGPPLRLVVTAARSLLQPMTPRLGLLEPVTLSVGAEVDFEVVVARLVELAYTRVD
MVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIEVDTLVAV
ACRELLLTEDVRARAAELAVRHRAGEPAITGSVSDMLAKLAEGIPVDGMEALLPVLRPGD
QALLTDQLADGTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAAMGAEAPVDVEQLSGS
GFAELDDVQAAATAAGHPWWTLSQLSDESAFELEVRAAPSARGHQHDIDGIFAMLRAHVA
TGGHAAIVAPGAGTAHRVVERLAESDTPAAMLESGAAGQGRLQKGIVGVLKGPLHDGVVI
PGANLVVITETDLTGNRATSPEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTE
RTVGGARREYLVLEYSSAKRGSGGQNTDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWT
NTKTKARRAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGYTETVDQLTAITE
VKSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTD
RMTGFPVAVKGLSRFTDPAESRAVIDGLADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEE
QRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG
PHDDKQIAAALRRELLRDGQAFYVHNRVSSIDRAAARIRELVPEARVVVAHGQMPEERLE
RTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGY
AYFLYPPNTPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVG
FDLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRR
LAAAADDAAVEAVVEELTDRYGTLPEPAQRLVAVARLRLLCRDAGITEVSAPSASTVRLA
PIALPDSAQVRLKRMYPAANYRATTSTVQVPIPRAGGVGAPRLRDFELVQMVANLVTALQ
GKPQQELGITSSSPAGTREERRAR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggccagctcttccacaaaccccgatcgcggggctcgtcgacttggcg
ctgacggcgccgaccttccagaaactcaccgcgacggcggccgcccggcccgcggagctg
cacctggtcggcccggccagcgcccgcctgttcgtcgccagcgccttggtggggcagggc
ccgttgctggtcgtcaccgcgaccggccgggaggccgacgatctgagcgccgagctgcgc
ggtgtcttcggggatgcggtcgcggccttcccgtcgtgggagacgctgccgcacgaacgc
ctgtcgccgggggtggacaccgtcggcacccgcctgatggtgttgcgccggctggctcac
cccgacgacgcgcggctgggcccgccgctgcggctcgtggtcaccgccgcacgctcgctg
ctgcagccgatgacgccgcggctcggcctgctggagccggtgacgctgagcgtcggcgcc
gaggtcgacttcgaggtcgtcgtcgcgcggctggtcgagctggcctacacccgtgtcgac
atggtcgggcggcgcggcgaattcgccgtgcgcggcggcattctcgacgtcttcccgccg
accgccgagcacccggtccgcatcgagttctggggcgacgaggtcagcgagatgcggatg
ttctccgtcgccgatcagcggtccatccccgagatcgaggtcgacacgctggtcgcggtg
gcctgccgcgagctgctgctgaccgaggacgtgcgggcgcgggcggccgagttggccgtg
cggcatcgggcgggggagcccgctatcaccggcagcgtctccgacatgctggccaagctg
gccgagggcatcccggtcgacggcatggaggcgctgctcccggtgctgcggccgggcgac
caggcgctgctgaccgatcagctggccgacggcacgccggtgctgctgtgtgacccggag
aagatccgcacccgggccgccgacctgatcaagacgggtcgcgagttcctcgaggcgtcg
tggtcggtcgcggcgatgggcgctgaagctccggtcgacgtcgagcagctcagcgggtcg
ggtttcgcggaactcgacgacgtgcaggccgcggccaccgccgccggccatccctggtgg
accctgagtcagctgtccgatgagtcggccttcgagctggaagtgcgcgcggcgccgtcg
gcccgcgggcaccagcacgacatcgacggcatcttcgccatgctgcgcgcccacgtcgcc
accggcgggcacgccgcgatcgtcgcgcccggagccggcacggcccaccgcgtggtcgag
cgcctggccgagtccgacaccccggccgccatgctggagtccggcgcggcaggccaaggg
cggttgcaaaaagggatagtcggggtgctcaagggaccgctgcacgacggcgtcgtcata
ccgggcgccaacctggtggtcatcaccgagaccgacctgaccggcaaccgggcgacctcc
ccggagggcaagcggctcgcggccaagcggcgcaacaccgtcgacccgctggcgttgacc
gccggcgacctggtggtgcacgatcagcacggcatcgggcgattcgtggagatgacggaa
cgaaccgtaggcggcgcccggcgcgagtatctggtgctcgaatactcgtcggcaaaaagg
ggcagcggcggccaaaacaccgacaagctgtacgtccccatggattcgctggaccaactg
tcccggtatgtcggcggccaggcccccgcgctgagcaagttgggaggcagcgactggacc
aacaccaagacgaaggcccgccgcgcggtccgcgagatcgccggcgagttggtggcgctg
tacgccaaacggcaggctagtcccggccacgcgttcgccccggacacgccgtggcaggcc
gagatggaggacgcgttcggctacaccgagaccgtcgaccagctgaccgcgatcaccgag
gtcaagtcggacatggaaaagccgatcccgatggaccgggtgatctgcggcgacgtcggc
tacggcaagaccgagatcgcggtgcgcgcggcgttcaaggccgtccaggatggtaagcag
gtcgcggtgctggtgcccaccacgctgctggccgaccagcatctgcagaccttcaccgac
cggatgaccggatttccggtcgccgtcaagggcctgtctcggttcaccgacccggctgag
tcgcgcgccgtgatcgacggcctggccgacggttcggtcgacgtcgtgatcggcacgcac
cggctgctgcagacgggcgtgcggtggaaggacctcggcctggtcgtcgtcgacgaggag
cagcggttcggcgtcgagcacaaggagcacatcaagtcgctgcgcacccacgtcgacgtg
ctgacgatgagcgcgacgcccatcccgcgcacgctggagatgagcctggccggcatccgc
gagatgtccacgatcctgacgccgcccgaggagcgctaccccgtgctgacctacgtcggg
ccgcacgacgacaagcagatcgccgccgcactgcggcgcgagctgctgcgcgacggccag
gccttctacgtgcacaaccgggtcagctcgatcgaccgggcggcggcccggatccgggag
ctggtgccggaggcccgcgtcgtcgtggcgcatgggcagatgcccgaggaacggctggaa
cgcaccgtgcaggggttctggaaccgcgagtacgacatcctggtgtgcaccacgatcgtc
gagaccgggctggacatctccaacgccaacaccctgatcgtcgagcgtgccgacaccttc
gggctctcgcagctgcaccagctgcggggaagggtcgggcgcagccgcgagcgcggttac
gcctacttcctctacccgccgaacacgccgttgaccgagacggcctacgaccggttggcg
accatcgcccagaacaacgagctgggcgccggcatggcggtggccatgaaggacctcgag
atccgcggcgccggcaacgtgctgggtgtcgaacagtccggccacgtcgccggggtgggt
ttcgacctgtacgtgcgcttggtgggcgaggccgtcgaggcatatcgggcggccgccgat
ggtaagacggtgaccacccccgaggagcctaaggatgtgcgcatcgacctgccggtggac
gcccatctgccgccggactacatcgccagtgaccggctgcggctagaggcgtaccggcgg
ctggcggccgcggccgacgatgccgccgtcgaggccgtggtcgaggagctcaccgaccgc
tacgggacgctgcccgaacccgcgcagcggctggtggcggtggcgcggctgcggctgctg
tgccgtgacgccggcatcaccgaggtgtcggcgccctcggcgtccaccgtgcggctggcg
ccgatcgccctgccggactccgcgcaggtgcggctcaagcggatgtatccggccgcgaac
tatcgcgcgaccacgtccacggtgcaggtgcccatcccgcgggccggcggtgtcggcgcg
ccccgcctgcgtgacttcgagctggtccagatggtggcgaatctggtgacggcgctgcaa
gggaaaccacagcaagaacttggtataacgagttcgtcacctgcagggacgagggaggag
cgacgggcgcgatga
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integrated database retrieval system
