Mycobacterium shigaense: MSG_04106
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Entry
MSG_04106 CDS
T05717
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining DNA repair protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mshg
Mycobacterium shigaense
Pathway
mshg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mshg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MSG_04106 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mshg03400
]
MSG_04106 (ligD_2)
Enzymes [BR:
mshg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MSG_04106 (ligD_2)
DNA repair and recombination proteins [BR:
mshg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MSG_04106 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAX94228
UniProt:
A0A1Z4EMP8
LinkDB
All DBs
Position
complement(4396396..4397850)
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AA seq
484 aa
AA seq
DB search
MAPRVRLTNPEKVLYPVTGTTKSDVFDYYTSIAEAMLPHIAGRPATRKRWPNGVEQPSFF
EKQLASSAPDWLPRASVAHRRSGTTTYPIIDSVDGLAWIAQQAALEVHVPQWRFVAEWTR
SNAEELKPGPATRLVFDLDPGEGVTMAQLATVARAVRDLIADIGLATFPLTSGSKGLHLY
TPLDEPVSSRGASVLAKRVAQQLEKTMPKLVTSTMTKSLRDGKIFLDWSQNNGSKTTIAP
YSLRGREYPTVAAPRTWEELDDPGLTQLRYDEVLARVARDGDLLAPLDALNDQTAVPDRL
TKYRSMRDASKTPEPVPSTKPAKPAAGHGNTFVIQEHHARRLHYDFRLERDGVLVSWAVP
KNLPGTTSVNHLAVHTEDHPLEYGSFEGNIPKGEYGAGRVVIWDAGTYEAEKFNDSAEKG
EVIVNLHGSRISGRYALIQTNGDQWLAHRMKDQKVFRFDELYPMLASEGSVMRLKASQWA
FEGK
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcgccccgggtgaggctgacgaaccccgagaaggtgctttaccctgtaaccggcacc
actaagtccgacgtcttcgactactacaccagtattgcggaggcgatgctgccgcacatc
gccggacgtccggccacccgtaagcgttggccgaatggcgttgagcagccgtcgtttttc
gaaaagcagctggcctcatcggctccggactggttgccgcgggccagtgttgcccaccgc
cgctccgggacgacgacatatccgatcatcgacagcgtcgacgggttggcgtggatcgcg
caacaggcggcgctggaagtgcacgtaccgcaatggcgattcgttgccgagtggacgcga
agcaacgccgaagaactcaagcccggtccggccactcgattggtgttcgacctggacccc
ggggagggcgtgacgatggcgcaactggccacggtggcccgcgccgtgcgcgacctgatc
gccgacatcgggctggccaccttcccgctcaccagcggaagcaaagggctgcatctttac
acgccgctggacgagccggtgagcagccgcggtgcctcggtgctggccaaacgtgttgcc
cagcaactggaaaagaccatgcccaagctggtcacgtcgaccatgacgaagagtctgcgg
gacggcaagatcttcctggactggagccagaacaacggctcgaagaccaccatcgcaccg
tactcgttgcggggccgcgaataccccacggtcgcggccccgcgcacctgggaggagctc
gacgaccccggcttgactcagctgcgctacgacgaggtgctggcccgggtggcgcgcgac
ggcgatctactggcgccgctggacgccttgaatgatcaaacggccgtcccggatcggctg
accaagtaccgcagcatgcgcgacgcttcgaagacgcccgagccggtaccttcaacaaag
ccagcgaaacccgctgccggccatggcaataccttcgtaatccaggaacaccatgcccgc
cggctgcactacgacttccggctggaacgcgacggcgtgctggtgtcgtgggcggtcccg
aagaatctgcccgggaccacctcggtaaaccatctcgcggtgcacaccgaggaccacccg
ctggaatacggcagcttcgagggcaacatcccgaaaggtgagtacggtgcaggcagggtg
gtcatctgggacgccggcacctacgaggccgagaagttcaatgactccgccgaaaaaggt
gaagtcatcgtcaacctgcacggtagccgaatctcagggcgttacgcgctgattcaaacc
aacggcgaccagtggctggcgcaccggatgaaggaccagaaggttttccggttcgacgag
ctgtatcccatgctggcgtcggaaggttcggtgatgcgactcaaggcaagccagtgggca
ttcgagggcaagtga
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