Mycobacterium shottsii: MSHO_20140
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Entry
MSHO_20140 CDS
T07303
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msho
Mycobacterium shottsii
Pathway
msho03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MSHO_20140 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msho03400
]
MSHO_20140 (ligD)
Enzymes [BR:
msho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MSHO_20140 (ligD)
DNA repair and recombination proteins [BR:
msho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MSHO_20140 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DUF6866_C
Motif
Other DBs
NCBI-ProteinID:
BBX56669
UniProt:
A0A7I7LB47
LinkDB
All DBs
Position
1916344..1918608
Genome browser
AA seq
754 aa
AA seq
DB search
MTLTNADKVLYPATGTTKSDVFGYYTGIAEVMIPHIAGRPATRKRWPNGVDQASFSEKQL
ASSAPDWLPRASVVHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEWTSKGEIL
TPGPATRLVFDLDPGEGVTMAQLAQVARAVRDLLADIGLSTLPLTSGSKGLHLYTPLDEP
VSSKGATVLAKRVAQQLETVMPALVTATMTKSLRAGKVFLDWSQNSGSKTTIAPYSLRGR
EQPTVAAPRSWEELDDPGLRQLTYDEVLARLTRDGDLIAALDADLPGDDRLLKYRSMRNA
SKTPEPVPRARPVVGRGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETTSVNHL
AVHTEDHPLEYATFEGNIPKGEYGAGKVIIWDSGTYGTEKFCDDSRNGAEKGEVIVNLHG
SRISARYRLIQTNGDQWLAHRMKDQTVFDFDTLAPMLTTHGSVAGLESGQWAFEGKWDGY
RLLVEADHGALRLRSRSGRDVTAEYAQLSSMATDLADHHVVLDGELVALDSSGVPSFNEM
QNRVRATRIEFWAFDLLFLDGRSLLRARYRDRRKLLETLGSAGNLIVPESLPGDGAEALA
YSHKRGWEGVIAKRRDSGYQPGRRSSAWIKDKHWNTQEVVIGGWRVGEGGRSSGIGSLLM
GIPGPSGLHFAGRVGTGFTERDLANLKKTLAPLHTDESPFDAVLPAREAKGVTFVAPTLV
GEVRYSEWTPDDRLRQSSWRGLRPDKNPSEVVRE
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
gtgacactgaccaacgcggacaaggtgctgtacccggctaccggaaccaccaagtctgac
gtcttcggttactacaccggcatcgccgaggtgatgatcccgcatatcgccgggcgcccg
gcgactcgcaaacgctggcccaacggcgtcgatcaggcgtccttttccgaaaagcagctg
gcgtcgtcggcgccggactggctgccgcgtgccagcgtggtgcaccggtcgggaacgacg
acctatccgatcatcgacagcgccaccgggctggcctggatcgcacaacaggccgccctc
gaggtgcacgtcccgcagtggcggttcgttgccgagtggacgtcgaaaggtgaaatcctc
acgcccgggccggccacccgattggtgttcgacctggacccgggcgagggcgtgacgatg
gcccaactcgcgcaggtggcgcgggcggtgcgcgatctgctcgccgacatcggcctgagt
accctcccgctcaccagcggtagcaagggcctgcacctctacaccccgctcgacgagccg
gtgagcagcaagggcgccacggtgttggccaaacgggtcgcgcagcaactggaaacggtg
atgccggcgttggtcaccgcgaccatgaccaagagtctgcgggccgggaaagtgttcctg
gactggagccaaaacagtggttcgaagaccaccatcgcgccgtattcgctgcgtgggcgc
gaacaaccgaccgtcgccgcaccacgcagctgggaggagctcgacgacccggggctgcgc
cagctgacctacgacgaggtgcttgcccgcctcacccgcgatggggatctgattgcggcg
ctggacgcggacctccccggtgacgaccggctgctcaaatatcgaagcatgcgcaacgcg
tcgaaaacgccggagcccgtgccccgagccagacccgttgtcgggcggggtaataccttc
gtgatccaagagcatcacgcgcgccgtctgcattacgacttcaggctggagcgtgatggg
gtactggtgtcatgggcggtgccgaaaaacctgccggaaaccacgtcggtgaaccacctg
gccgtgcacaccgaagatcatccgctggaatacgcgacgttcgagggcaacatcccgaaa
ggggagtacggcgccggcaaggtgatcatctgggactccggcacctatggcaccgagaag
ttctgcgacgactcgagaaacggtgcggaaaagggggaggtgattgtcaacctgcacggc
agtcgaatctcggcgcggtacaggctgattcagaccaacggggaccaatggctggcgcat
cgcatgaaggaccagacggtcttcgatttcgacaccctcgcgcccatgctcaccacccac
ggttcggtggcaggtctcgagtcgggtcagtgggcgttcgaaggcaagtgggacggctac
cggctgctggtcgaagccgaccatggcgcactgcgactgcgctcccgcagcggacgtgac
gtcaccgcggaatacgcccaattaagttcaatggcaaccgatctcgctgatcaccacgtg
gtgctcgacggtgaattggtggccctcgactcctccggagtgcccagcttcaacgagatg
cagaaccgggtgcgcgccacccgcatcgagttctgggcgttcgacttgctctttctggac
ggtcgctcgctattgcgggccagataccgcgaccggcgcaagctactggaaaccctgggc
agtgcgggcaatctgattgttccggagtcgttgcccggtgacggcgccgaggcgctggcc
tactcgcacaagcgcggttgggagggagtcattgccaagcgccgcgactccggctatcaa
cccgggcggcgctcgtcggcgtggatcaaggacaaacactggaacacccaggaagtcgtc
atcggcggttggcgagttggggagggtgggcgcagcagcgggattggatcgttgctcatg
ggcattcccggcccgagcggtttgcacttcgccggccgtgttggaaccggcttcaccgaa
cgtgacctggccaacctcaagaagacgctggcgccgctgcataccgacgaatccccattc
gacgctgtgcttccggcacgcgaggccaagggtgttacgttcgtcgcgccgacgctggtc
ggggaggtgcgctatagcgagtggacccccgatgaccgattgcggcaatccagctggcgt
gggttgcgcccggacaaaaacccgagtgaggtggtgcgtgaatga
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