KEGG   Methanobrevibacter smithii: Msm_0645
Entry
Msm_0645          CDS       T00539                                 
Name
(GenBank) ATP-dependent DNA ligase, Cdc9
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
msi  Methanobrevibacter smithii
Pathway
msi03030  DNA replication
msi03410  Base excision repair
msi03420  Nucleotide excision repair
msi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Msm_0645
   03410 Base excision repair
    Msm_0645
   03420 Nucleotide excision repair
    Msm_0645
   03430 Mismatch repair
    Msm_0645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msi03032]
    Msm_0645
   03400 DNA repair and recombination proteins [BR:msi03400]
    Msm_0645
Enzymes [BR:msi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Msm_0645
    6.5.1.6  DNA ligase (ATP or NAD+)
     Msm_0645
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Msm_0645
DNA replication proteins [BR:msi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Msm_0645
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Msm_0645
DNA repair and recombination proteins [BR:msi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Msm_0645
   NER (nucleotide excision repair)
    Other NER factors
     Msm_0645
   MMR (mismatch excision repair)
    Other MMR factors
     Msm_0645
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: ABQ86850
UniProt: A5UKX2
LinkDB
Position
625786..627441
AA seq 551 aa
MKYQELVDVYSALENTTKRLEKTQIISNFLLKLDSTTLEQVGLLILGSIFPAWSDKEIGI
GNKLVMQAVGEAVGVTPDKVEDAVRDQGDIGLACISLYAKKSQTTFFSQPLTIDFVFKSL
RKLSEKSGARSTKRKIDIILEMLSQASASEAKYLTRTILEELRIGVGEGVVRDAIAQAFN
IDKSVVERAMMLTNDLGLIAVVAKEKGEGGLKELNLTPGTPVKPMLAQLAPPIPEIINEM
GVAICETKYDGIRLQVHRHSDEIKIFTRRLENITHALPEIVDLFNEYLPHEDYIVEGEVI
ATRDGNPLSFQNILHRVRRKHNIDEAMEQVPLKVFLFDLLYYIVPMIDEPLLKRRKKLEE
IVNTTPDEINLSNMVYGTPDTIKEVEDLFELSIAQHHEGIMIKDAGEPYIPGLRGKKMLK
YKAEPETLDMVVVGGTYGIGKRGDFVGSYLVSLRDEDNNLKTVAYVATGLDDATLEYLTK
KMKEYELSTKGREIVVEPKIVLEVAFSEIVESPEYETGYSLRFPVVKNIRKDKGVDDIDT
VERLISMYETQ
NT seq 1656 nt   +upstreamnt  +downstreamnt
atgaaatatcaagaattagtagatgtatattctgccctggaaaatacaactaaaagactg
gaaaaaacgcaaatcatatctaatttcctattaaaattagacagcactacccttgagcag
gtaggtttgctaatattaggcagcatatttcctgcatggagtgataaagaaattggaatt
ggtaataaattagttatgcaggcggttggtgaagctgtaggagttactcctgacaaggtt
gaagatgcagttcgtgatcagggagacatcggacttgcatgcattagcttatatgctaaa
aaatcacagaccacattcttttctcagcctttaacaatagattttgtatttaaaagctta
agaaaactttctgaaaaaagcggagcaagatcaacaaaacgtaaaattgacataattttg
gaaatgctgtctcaagcttcagccagcgaagcaaaatatttaacccgtactattcttgaa
gaacttagaattggtgttggagaaggtgttgtaagagatgcaatagctcaggcattcaat
attgacaaatcagttgttgaaagggcaatgatgcttacaaatgacttaggtttgatagct
gttgttgcaaaagaaaaaggggaaggcggacttaaagagttaaacctgactcctggaact
ccagtaaaacctatgcttgcacagcttgcacctccgattccagaaatcataaatgaaatg
ggagtagctatctgtgaaaccaaatacgacggaattcgtcttcaggtacacagacacagt
gatgaaataaaaatatttacaagaagacttgaaaacatcacccatgcactgcctgaaatc
gtggatttatttaatgaatacctccctcatgaagattatattgtagaaggtgaagtaata
gctacaagagacgggaaccccttatctttccagaatattctacatagagtcagaagaaaa
cacaatattgacgaagctatggaacaggtccctctaaaagttttcctctttgatttgtta
tactacatagttccgatgattgatgaaccattacttaaaaggagaaaaaaacttgaggaa
atcgtcaacaccacaccagatgaaatcaatttaagcaacatggtttatggaactccagat
actattaaagaagtggaagatctgtttgaattgtcaatagctcaacatcacgaaggaata
atgattaaagatgctggagagccatatattccaggacttcgtggtaaaaaaatgcttaaa
tataaggcagaacctgaaacattggacatggttgttgttggcggaacatacggtatcggt
aaaagaggagattttgtcggctcatatctagtatccctacgtgatgaagacaataatcta
aaaacagttgcttatgtggctacaggtcttgatgatgctacactagaatatcttactaaa
aaaatgaaagaatacgaactgtctacaaaaggcagagaaattgttgtagaacctaaaatc
gtattggaagtggcattcagtgaaatcgttgaaagtcctgaatatgaaaccggatactca
ttgcgtttccctgttgttaaaaatatcagaaaagacaaaggagtagatgatattgataca
gttgaaaggttaatttcaatgtatgaaactcaataa

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