Mycobacterium simiae: MSIM_34550
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Entry
MSIM_34550 CDS
T07396
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msim
Mycobacterium simiae
Pathway
msim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MSIM_34550 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msim03400
]
MSIM_34550 (ligD)
Enzymes [BR:
msim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MSIM_34550 (ligD)
DNA repair and recombination proteins [BR:
msim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MSIM_34550 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BBX42004
UniProt:
A0A7I7KJS4
LinkDB
All DBs
Position
3639254..3641518
Genome browser
AA seq
754 aa
AA seq
DB search
MAPRVKLTNADKVLYPATGTTKRDVFDYYIRIADVMLPHIAGRAATRKRWPNGVEEDSFF
EKQLASSAPDWLTRASVTHRSGTTTYPIIDSVDGLAWIAQQAALEVHVPQWRFVAQWTRS
KAEERKPGPATRLVFDLDPGEGVTMTHLCEVAHAVRELITDIGLTTFPLTSGSKGLHLYT
PLDEPVSSGGASVLAKRIAQQLEKAMPKLVTSTMTKSLRTGKVFLDWSQNNGSKTTIAPY
SLRGRQHPTVAAPRTWEELEDPQLRQLRYDEVLDRVARDGDLLAPLDASEIGAPIADRLT
KYRSMRDASKTPEPVPQAKPVAGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLP
ETTSVNHLAVHTEDHPLEYGSFEGIIPNGEYGAGKVVIWDAGTYDAEKFRDDEVIVNLRG
TRISGRYALIQTNGDQWLAHRMKDQHVFEFEEIAPMFATHGSVAKLKASQWAFEGKWDGY
RLLVETDHGAVRVRSRSGRDVTGEYPQLQSLADDLADHHVVFDGEAVVLDKSGVPSFHAM
QNRGRSSRVEFWAFDVIYLDGRSLLRAKYSDRRKLLETLSSASNLIVPELLPGDGADAVE
HSLAQGWEGVVAKKRDSTYQPGRRSASWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSLMV
GIPSEGGLRFVGRVGTGFTERDLANLKKALAPLHTDESPFDARLPTRDAKGVTFVEPVLV
GEVRYSEWTPDNRLRQPSWRGMRPDKKPSEVVRE
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggcaccacgggtgaagctcaccaacgcggacaaggtgctgtatccggcgaccggcacc
accaagcgcgacgttttcgactactacatccgcatcgccgacgtgatgcttccgcacatc
gccggccgcgccgcaacccgcaaacgttggcccaacggcgtcgaagaggactcgtttttc
gaaaagcaactggcatcgtcggcgccggactggctgacccgcgccagcgtcacgcaccga
tccgggaccaccacgtatccgatcatcgacagcgtggacggcctggcctggatcgcccag
caggctgccctggaggtgcacgtgccgcagtggcggttcgtcgcgcagtggacgcgaagt
aaggccgaggagcgcaagcccggtccggcaacacgattggttttcgacctagatccgggc
gagggcgtgacgatgacgcacctctgcgaggtcgcccacgccgtacgggagctgatcacc
gatatcgggttgaccacctttccgttgaccagcggcagcaaaggattgcatctctacacc
ccgctggacgagccggtgagcagtggcggtgccagcgtgctagcgaaacgcattgcgcag
cagctggaaaaggcgatgcccaagctggtgacctcgacaatgaccaagagtctgcgtacc
ggcaaggtgttcctggactggagccagaacaacggctcgaaaaccactatcgcgccgtac
tcgctgcgcggccgccaacatccgacggtggccgcaccgcgcacctgggaggaactcgag
gatccgcaactgcgccaactgcgttacgacgaggtgctcgaccgggtcgctcgcgacggc
gatctgctcgcaccgctagatgcctcagaaatcggagcaccgatcgcagaccgactgacc
aaataccgcagcatgcgcgatgcgtcgaaaaccccggaaccggttccccaagccaaacct
gttgcaggtcaaggcaatacctttgtcatccaggagcatcatgcccgccggctgcattac
gatttccggttggaacgcgacggggtgctggtgtcatgggcggtgccgaagaacctgccc
gagaccacctcggtgaatcacctcgcggtccacaccgaagaccatccgctcgaatacggc
tcctttgagggcatcatccccaacggcgagtacggcgcgggcaaggtcgtcatttgggat
gccggcacctacgatgccgagaagttccgcgacgacgaggtcatcgtgaatctgcgcggc
acccggatttcgggacggtacgcgctgatccagaccaacggtgaccagtggctggcgcac
cggatgaaggaccagcatgtcttcgagttcgaggagattgcaccgatgttcgcaacgcac
ggctcggtggcgaagctcaaggcaagccaatgggccttcgaaggcaaatgggacggttac
cggctgctggtcgagacggatcacggcgccgtgcgggtgcggtctcgaagcggtcgcgac
gtcaccggggaatatccccaattgcagtcgctggcagacgatttggccgaccatcacgtc
gtgttcgacggcgaggcggtggtgctggacaaatccggcgtgcccagttttcatgcgatg
cagaaccgcggccgcagcagccgcgtcgaattttgggcgttcgacgtgatctacctcgac
ggccgttcgctgctacgggcgaagtactccgaccgccggaaactgctggaaacactatcc
agcgcaagcaatctcatagttcccgagttgctgccgggggacggcgccgacgctgttgaa
cattccctcgcccagggttgggagggtgtggtcgccaagaagcgcgactcgacctatcag
cctggccgacgatcggcgtcctggatcaaagacaagcattggaacacacaggaagtcgtc
atcggcggctggaaagccggagaaggcgggcgcagcagcggcatcggatcgctgatggta
ggcattcccagcgaaggtgggctgcgcttcgttggccgagtagggaccggcttcaccgaa
cgcgatctggccaacctcaaaaaggcgctggcaccgctgcataccgacgagtcgcccttc
gacgcgcgactgccgacccgcgacgccaagggcgtgaccttcgtcgagccggttctggtg
ggcgaggttcgctacagcgaatggaccccggataatcggctgcgccaaccgagttggcgt
gggatgcgcccggacaagaaacctagcgaggtggtgcgcgaatga
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integrated database retrieval system
