Magnolia sinica: 131222342
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Entry
131222342 CDS
T09699
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
msin
Magnolia sinica
Pathway
msin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131222342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msin03041
]
131222342
Enzymes [BR:
msin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131222342
Spliceosome [BR:
msin03041
]
Complex A
U2 snRNP components
U2 related factors
131222342
Complex B
131222342
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
131222342
NCBI-ProteinID:
XP_058073355
LinkDB
All DBs
Position
13:complement(1366565..1372047)
Genome browser
AA seq
1272 aa
AA seq
DB search
MEDGKHKSRRDDGERKEDSKRSDRDRDRDRERDKERNGERYKDREKVRDRDTEKKDRESR
RSDRERSVDEKYQDKHRESRHKEREKERERTKEKAKDREREREREREREREDRERDKEKE
REEREREREREREEKERDREREREEREREREREREKERERERARERERERVREREREREE
RERERDDRERERERVREREKRRELDRDEDRDYEDGREHDRKRRRRDDDSRERERERSRSD
RHKEENDDSRRKKSEDESDGKEKKSREEDLEEEQRKLDEEMDKRRRRVQEWQELKRKKEE
HERENMGDANADEPKSGKNWTLEGESDDEEAVPAAKLDKDPDSNGDAKPADQDGDAMAVD
SENGTAVPDGGEAANYEEEIDPLDAFMNSMVLPEVEKLNTADGPATTSDNKKSDPGKKDL
KDSRSNGDQVRKGTKKTMGRIIPGEDSDSDYGDPENDEVPLEEEDDDEFMKRVKKTKAEK
LSIVDHSKIQYPPFRKNFYIEVKETSRMTSEEVAAYRKQLELKIHGKDVPKPVRTWIQTG
LTSKILDTIKKLNYEKPMPIQAQALPIIMNGRDCIGIAKTGSGKTLAFVLPMLRHIKDQP
PVVPGDGPIGLIMAPTRELVQQIHSDIRKFTKGLGINCVPVYGGSGVAQQISDLKRGTEI
VVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVL
FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRQESERFLRLLELLGEWYE
KGKILVFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLMIATSI
AARGLDVKELELVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKAL
ELSEQAVPADLKALADGFMAKVNQGTEHAHGTGYGGSGFKFNEEEDEARKAAKKAQAREY
GFEEDKSDSDSEDEGVRKAGGDLSQAAALAQAAALAAVSKVAITSMPVPATAAHLLSNGG
LPAVTLPGVVGLPNTAALPATSLANDAAARAAALAAALNLQHNLAKIQADAMPEHYEAEL
EINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYYPPGKIPGPGERKLYLFIEGPSES
SVKKAKAEVKRVLEDYTAQSLSLPGTAQPGEDPSLCSHVRPCIFVRMRWRSTGWQAIYGM
TQKIRKPLMVSVWIPLKLMSGLSRHFFHFLPLIYRYFDFLNLYLILLQFSFSLGISWASL
LEIYIILLLPGK
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggcaagcacaaatctaggagagatgatggtgagaggaaggaggattctaag
agaagcgaccgtgaccgcgatcgagatcgagagagggacaaggagaggaatggagagaga
tacaaggatcgggagaaggttcgggatcgggatacagagaagaaggatcgtgaaagtcga
cggtcagacagagaaaggagcgtggatgagaagtatcaggataagcatcgggagtctcgg
cataaggaaagggagaaggagagggagaggacgaaagagaaggcaaaagatagagagagg
gagagggagagggagagggagagggagagagaagatcgagaaagggataaggaaaaagag
agggaggagagggagagggagcgagaaagggagagggaggagaaggagagggatagggag
agagaaagggaggagagggagagggagagggagagggagagggagaaagaaagagagagg
gagagggccagggagagggagagagaaagggtgagggagagggaaagggagagggaggag
agagagcgagagagggatgatagggagagggaaagggagagggttagggagagggagaag
cgccgggaattggatagagatgaggacagagattatgaagatggtagggaacatgacagg
aagcggcgcaggagagatgatgattctagagagagggaacgggagcggagcaggtcggat
aggcacaaggaagagaatgatgacagtagaaggaagaagagcgaggacgaatctgatggt
aaagagaaaaagagccgagaagaggatctagaggaagagcagcggaagctggatgaggag
atggataagaggaggcggagagttcaggagtggcaggagttgaaaaggaagaaggaggaa
cacgagagggaaaacatgggtgatgcaaatgctgatgaacctaagtctggtaagaattgg
accttagaaggagagtccgatgatgaagaagctgttccagcagcaaagttggacaaggat
ccagactcgaatggagatgctaagcctgcagatcaagatggggatgccatggcagtagat
tctgagaatgggactgctgtacctgatggaggtgaagctgctaattatgaggaggaaatt
gatcccttagatgctttcatgaactctatggtattgcctgaagttgaaaagctgaacact
gcagatggtccagccaccacatctgacaataaaaaatcagatcctgggaagaaggatctg
aaggacagtcgtagtaatggtgatcaagtgagaaaaggtacgaagaaaacaatgggaaga
ataatcccaggtgaggattctgattcagattatggggatcctgagaatgatgaagttccg
cttgaagaagaagatgacgacgaattcatgaaaagggtgaagaagacaaaagctgagaaa
ctatcaattgtcgaccactcgaagatccagtatcccccgttccggaaaaatttctacatc
gaagtgaaggaaacttcaaggatgacatctgaggaagttgctgcttaccggaaacaactc
gaattgaaaatacatgggaaagatgtgcccaagcctgtgagaacatggatccagactgga
ttgacaagtaaaattctagatacaataaaaaagcttaattatgaaaagccgatgccaatt
caagctcaggcgctgccaatcattatgaatggtcgagactgcattggtattgcaaaaaca
ggatcaggtaaaactctagcttttgtgttgccaatgttgaggcatatcaaggaccagccg
ccagtggtccctggtgatgggcctattgggctgataatggcacctacaagagagcttgta
caacagattcacagtgatatcaggaaatttaccaagggtctgggtattaactgtgtgcct
gtatatggaggctctggtgttgctcaacaaatcagtgatctaaagagaggcacggagatt
gtcgtctgtactcctggtagaatgatagacatattatgtacgagtagtggcaagatcaca
aatctgcgtagagttacttatttggttatggatgaagctgaccggatgtttgacatgggt
tttgaacctcagatcactcgtattgttcaaaatacccgaccagaccgacagactgtactt
ttctctgccacttttcctcgtcaagttgagatactggcccgcaaggtgttgaacaagcct
gtcgaaatccaggttggtggaaggagtgttgttaacaaggatataactcagttagttgag
gtgagacaagaaagcgagaggtttttaaggctgttagaactccttggagagtggtatgag
aaggggaagatcctggttttcgtccactcgcaggagaaatgtgattctttattcaaggac
ttgctcaggcatggttacccttgcctttcgcttcatggggctaaggatcagacagaccgt
gaatccaccatctctgatttcaagagcaatgtctgcaatctgatgattgcgacaagtata
gccgctaggggtttagatgtgaaggagcttgaactggtggtgaactttgatgttccaaac
cattatgaagactatgttcaccgtgttggtcggaccggtcgagctggtagaaaaggctgt
gcgatcaccttcatctcagaggaagatgcaagatatgcaccagatcttgtaaaagcctta
gaactttctgaacaagctgttcctgcagatctaaaggcactcgccgatggcttcatggcg
aaagtcaatcagggaacggaacacgcccatgggactggttatgggggcagtggtttcaaa
ttcaacgaagaggaggatgaagccaggaaagctgcaaagaaggcccaggcaagagaatat
ggtttcgaggaagacaagtcggattcagactcagaagatgaaggggttcggaaggcaggg
ggtgatctttcacaggcagctgctcttgctcaagctgctgccttggccgcagtttccaag
gtcgctattacttcaatgccagttccggccacagctgctcacttgctttcaaatggagga
ctaccagctgtgacactccctggtgtggtgggtctaccaaacactgctgctttgccagca
acttccctggccaatgatgccgctgcgcgtgcggcagcgttagctgctgccttgaatttg
cagcataatcttgccaagatacaagctgatgcaatgcccgaacattatgaagcagagttg
gagatcaacgacttccctcagaatgctcggtggaaggtgacccacaaggagacgttaggt
ccgatttcggaatggactggagctgctatcactaccagagggcagtattatccgccgggt
aagatcccgggtcctggagaacgcaagctttacttgtttatcgaaggcccctccgaatcc
tctgttaagaaggcaaaagctgaagttaaacgagtcctcgaggactacacagcgcagtca
ttgtcattgccgggtacagcccagccaggggaagatccgagcctttgctcccatgtgcga
ccctgcatctttgttcgcatgagatggcgctcgacagggtggcaagcaatatacggtatg
actcagaaaatccggaagcccttgatggtttcagtttggatcccactcaagctgatgtcg
ggcttgtccagacattttttccatttccttccattgatttatcgatattttgatttctta
aatttatatctcattcttctccagttttccttttctcttggcatttcttgggcctctctt
ttagaaatttatatcattctcctccttccagggaaatga
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integrated database retrieval system
