Methanosarcina siciliae C2J: MSSAC_3014
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Entry
MSSAC_3014 CDS
T03863
Name
(GenBank) Ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
msj
Methanosarcina siciliae C2J
Pathway
msj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSAC_3014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msj03019
]
MSSAC_3014
Messenger RNA biogenesis [BR:
msj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSSAC_3014
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSSAC_3014
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AKB37604
UniProt:
A0A0E3PRA7
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Position
3723301..3724821
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AA seq
506 aa
AA seq
DB search
MSNKPENLILITDDGLRLDGRCADEIRPMKIEIGVLSRADGSCYLEWGRNKILVGVFGPR
EAHPRRSQRADSAVIRYKYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVILAELYPK
TAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGQIVLDLNKEED
NYGEADFPVAMTQDGEITLIQMDGHLTPEEIKKGLELVKKGCKEILALQQAVLRKKFETP
VEEPAAEAEEPEVEGETEKLAPTEFASEAAAVEEAFEETEELEEALEETSEPDILFCSEV
IPDSEEEEAEEKAEEEEAEEEAEEEEAEEEAEEEEAEEDLEDDLEEAEEEEAEEEAEEEE
AEEEEAEEEEAEEEAEEEAEEEEAEEEEAEEEEAEEDLEDDLEEDLEEFEGEEFAEEPLE
EEADSGEAEEEIELEAESEGLEEEADVEESPAPEEIVEPEIEAEVEVEEAPEAVEAEEEP
EEEKSEGPWKVVKDPSEDEDRGEKDE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataaacctgaaaatttaatattaatcactgacgatgggctgcgccttgacggg
agatgtgcggatgagataaggcccatgaaaattgagatcggtgtactttcacgggccgat
ggttcatgttatcttgaatggggaaggaataagattctggtaggcgtgttcggccccagg
gaagctcatccccgccgcagccagcgcgcagattcggcagtaatccgctacaaatacaat
atggcatcattctccgtggaggaccgcgctcgtccgggccccagcaggcggagcattgaa
atctcaaaggtttccagggaagctttcgagcctgtgatcctggctgagctgtaccctaag
acagcaattgacattttcgtagaagtgcttcaggccgatgcagggacaaggacagcagca
attaacgcttccagtattgcccttgcagatgccggaatcccgatgaagggccttattacc
tcctgtgctttcgggaaggttgacgggcagattgtacttgacctgaataaggaagaggac
aactacggagaagctgacttccctgtagcaatgacccaggacggagaaattactcttatc
cagatggacgggcaccttacacctgaagaaatcaagaaagggcttgagcttgtaaagaag
ggctgcaaagagatccttgcacttcagcaggcagttctgagaaagaagtttgagactcct
gttgaggagcctgcggcagaagccgaagaacccgaagttgaaggcgaaaccgaaaagctt
gccccaaccgaattcgcttccgaggcagcagctgttgaagaggcttttgaggaaactgaa
gaactcgaagaggccctcgaagaaacctctgaacctgatatccttttttgcagcgaagta
atccctgactccgaagaagaggaagctgaagaaaaggctgaagaagaggaagccgaagaa
gaggctgaagaagaggaagccgaagaagaggctgaagaagaggaagccgaagaagactta
gaggacgacttagaagaagctgaagaagaggaagccgaagaagaggctgaagaagaggaa
gctgaagaagaggaagctgaagaagaggaagccgaagaagaggctgaagaagaggctgaa
gaagaggaagccgaagaagaggaagccgaagaagaggaagccgaagaagacttagaggac
gacttagaagaagatctggaagaattcgaaggagaagaatttgcagaggaacctcttgaa
gaagaagctgattccggagaagccgaagaagaaattgagcttgaagctgaaagcgaggga
cttgaagaggaagccgatgtcgaggaaagccctgctccggaagaaattgttgagcctgaa
atagaggccgaagtcgaagttgaagaagctcccgaagcagtagaggcagaagaagagcct
gaagaagaaaaatccgaaggtccctggaaggtagtaaaagacccctctgaagacgaagac
agaggtgaaaaagatgagtga
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