KEGG   Methanosarcina siciliae C2J: MSSAC_3014
Entry
MSSAC_3014        CDS       T03863                                 
Name
(GenBank) Ribonuclease PH
  KO
K11600  exosome complex component RRP41
Organism
msj  Methanosarcina siciliae C2J
Pathway
msj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSSAC_3014
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msj03019]
    MSSAC_3014
Messenger RNA biogenesis [BR:msj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MSSAC_3014
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     MSSAC_3014
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: AKB37604
UniProt: A0A0E3PRA7
LinkDB
Position
3723301..3724821
AA seq 506 aa
MSNKPENLILITDDGLRLDGRCADEIRPMKIEIGVLSRADGSCYLEWGRNKILVGVFGPR
EAHPRRSQRADSAVIRYKYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVILAELYPK
TAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGQIVLDLNKEED
NYGEADFPVAMTQDGEITLIQMDGHLTPEEIKKGLELVKKGCKEILALQQAVLRKKFETP
VEEPAAEAEEPEVEGETEKLAPTEFASEAAAVEEAFEETEELEEALEETSEPDILFCSEV
IPDSEEEEAEEKAEEEEAEEEAEEEEAEEEAEEEEAEEDLEDDLEEAEEEEAEEEAEEEE
AEEEEAEEEEAEEEAEEEAEEEEAEEEEAEEEEAEEDLEDDLEEDLEEFEGEEFAEEPLE
EEADSGEAEEEIELEAESEGLEEEADVEESPAPEEIVEPEIEAEVEVEEAPEAVEAEEEP
EEEKSEGPWKVVKDPSEDEDRGEKDE
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgagtaataaacctgaaaatttaatattaatcactgacgatgggctgcgccttgacggg
agatgtgcggatgagataaggcccatgaaaattgagatcggtgtactttcacgggccgat
ggttcatgttatcttgaatggggaaggaataagattctggtaggcgtgttcggccccagg
gaagctcatccccgccgcagccagcgcgcagattcggcagtaatccgctacaaatacaat
atggcatcattctccgtggaggaccgcgctcgtccgggccccagcaggcggagcattgaa
atctcaaaggtttccagggaagctttcgagcctgtgatcctggctgagctgtaccctaag
acagcaattgacattttcgtagaagtgcttcaggccgatgcagggacaaggacagcagca
attaacgcttccagtattgcccttgcagatgccggaatcccgatgaagggccttattacc
tcctgtgctttcgggaaggttgacgggcagattgtacttgacctgaataaggaagaggac
aactacggagaagctgacttccctgtagcaatgacccaggacggagaaattactcttatc
cagatggacgggcaccttacacctgaagaaatcaagaaagggcttgagcttgtaaagaag
ggctgcaaagagatccttgcacttcagcaggcagttctgagaaagaagtttgagactcct
gttgaggagcctgcggcagaagccgaagaacccgaagttgaaggcgaaaccgaaaagctt
gccccaaccgaattcgcttccgaggcagcagctgttgaagaggcttttgaggaaactgaa
gaactcgaagaggccctcgaagaaacctctgaacctgatatccttttttgcagcgaagta
atccctgactccgaagaagaggaagctgaagaaaaggctgaagaagaggaagccgaagaa
gaggctgaagaagaggaagccgaagaagaggctgaagaagaggaagccgaagaagactta
gaggacgacttagaagaagctgaagaagaggaagccgaagaagaggctgaagaagaggaa
gctgaagaagaggaagctgaagaagaggaagccgaagaagaggctgaagaagaggctgaa
gaagaggaagccgaagaagaggaagccgaagaagaggaagccgaagaagacttagaggac
gacttagaagaagatctggaagaattcgaaggagaagaatttgcagaggaacctcttgaa
gaagaagctgattccggagaagccgaagaagaaattgagcttgaagctgaaagcgaggga
cttgaagaggaagccgatgtcgaggaaagccctgctccggaagaaattgttgagcctgaa
atagaggccgaagtcgaagttgaagaagctcccgaagcagtagaggcagaagaagagcct
gaagaagaaaaatccgaaggtccctggaaggtagtaaaagacccctctgaagacgaagac
agaggtgaaaaagatgagtga

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