Methylocella silvestris: Msil_1736
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Entry
Msil_1736 CDS
T00802
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msl
Methylocella silvestris
Pathway
msl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Msil_1736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msl03400
]
Msil_1736
Enzymes [BR:
msl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Msil_1736
DNA repair and recombination proteins [BR:
msl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Msil_1736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACK50682
UniProt:
B8EKE2
LinkDB
All DBs
Position
complement(1886469..1889135)
Genome browser
AA seq
888 aa
AA seq
DB search
MADTKLKTYRAKRDFAQTAEPSGEAPIAAGPRRRFVIQKHAATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGVIPKGQYGGGTVQLWDRGFWAPEGDKTPE
QALADGDLKFTLDGQRLYGSWVLVRMKADRTGGKRTNWLLIKHRDGYARDGDADALLAED
RSVASGRAMAAIAAGKGKGPKPFMLAGEQAADPKAVWDSNKGLAAEARAAPKATRKKSGA
ALAQMPDFLPPQLCQPVERPPSGDGWVHEIKFDGYRMQLRVAGGKATLKTRKGLDWTDKF
AAIAAEAADFPDAIIDGEIVALDSSGSPDFVALQAALSEQNTDDLIFYAFDLMFEGGRDL
RLEPLAARKQALARLIAGARLGAGALIRFVEHFETGGDAILQSACRLNLEGIVSKKRDAP
YQPGRSDSWTRAKCRAGHEVVIGGWTTTEGKFRSLLAGVHHGENFTYIGRIGTGFGEAKV
KTLLPKLKQFAAETSPFTGPSAPRKTASIHWLKPELVAEIEFAGFTGAGMVRQAAFKGLR
EDKPAEEVEAETPAPPEQAAVPDPAEIQASARSSSDKPMATANGKPIVMGVAISNPAKEL
WPADGAEAPVSKLDLARYYEAAGPWLIEHVRGRPCSLIRAPDGITGQQFFQRHAMAGASN
LLDLVTVSGDRAPYLQIDRVEGLAAVAQIAGLELHPWNCAPGRPETPGRLIFDLDPGPDV
AFEQVAAAALEMRDRLDALGLVSFCKTTGGKGLHVVTPLAVAKGSKLTWPEAKGFAQEVC
RRMAADNSNAYLLNMSKKLRAGRIFLDYLRNDRMSTAVAPLSPRARPGATVSMPLNWSEA
TNSLDPKAFTIRTSVGLLDKSKAWADYDSGARPLEAAIKRLGRAKAAA
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
gtggcggacaccaagctcaaaacctatcgcgccaagcgcgactttgctcaaacggcggaa
ccgagcggagaggctccgatcgcggccggaccgcgtcggcgcttcgtcatccagaaacat
gccgcaacccggctccattacgatcttcgactggagctcgacggagtcttcaaatcatgg
gctgtcaccaagggcccctcgctcgatccgcatgacaagcgccttgcagttgaggtcgag
gatcatccgctcgactatggcgatttcgaaggcgtgatccccaaaggccaatatgggggc
ggcacggtccagctgtgggatcgcgggttctgggcgccggagggcgacaagacgcctgaa
caggcgctggccgacggcgatctcaaattcacgctcgacggccaaaggctgtatggcagt
tgggtgctcgtgcgcatgaaggccgaccgcacgggcggcaaacgaaccaattggctgctc
atcaaacatcgcgacggctacgcgcgggatggcgacgccgacgctctgctggcggaggac
cgctccgtcgcttcgggccgcgcgatggcggcgatcgcggccggcaagggcaaggggcca
aagcctttcatgctcgcgggcgagcaagccgccgatccgaaagcggtgtgggactcgaac
aaggggctcgccgccgaggcgcgcgcggcgcccaaggccacgcggaaaaaatctggcgcg
gctttggcgcaaatgccggatttcctgccgccgcagctttgccagccggtcgagcggccg
ccttcgggcgacggttgggttcatgaaatcaaattcgacggctatcgcatgcagcttcgc
gtcgccggcggcaaagcgacgctgaaaacgcgcaaggggctggactggaccgataaattc
gcggcgatcgctgcggaggcggcggatttccccgacgctatcatcgatggcgagatcgtc
gcgctggatagctcgggctcgcccgatttcgtggcgctgcaggcggcgctttcagaacag
aataccgatgatctgattttctacgccttcgacctgatgttcgagggcgggagagatttg
cggctcgagccgctcgccgcgcgcaagcaggcgttggcgcgtctcatagccggcgcgcgg
cttggcgcgggcgcgctgatccgtttcgtcgagcacttcgagaccggcggcgacgcgatt
ttgcaatccgcctgccgcctcaatctggaaggcatcgtttcaaagaaacgcgacgcgccc
taccagcccggccgctccgacagctggaccagggcgaagtgccgcgccggccacgaggtg
gtgatcggcggatggacgaccacggaggggaaattccgctccctgttggcgggcgtccat
cacggcgagaatttcacctatatcggccgcatcggaacggggttcggcgaagccaaggtc
aaaaccctgctgccgaagctgaagcagttcgcggcggagacatcgcccttcaccgggccg
agcgcgccacgcaaaaccgcttcgatccattggctgaagccggagctcgtcgccgagatt
gagtttgcggggtttacaggcgccggcatggtgcggcaggcggccttcaaagggctgcgc
gaagacaagccggccgaagaggtcgaagccgagacgccggccccgccggagcaagctgct
gttcccgatcccgcagagattcaggcgagcgcgcgttcatcctcggataagcccatggcg
acggccaacggcaaacccatcgtcatgggcgtcgccatctccaacccggcgaaggagttg
tggccggctgacggcgccgaagctccggtctcgaaactcgatctggcgcgctattacgaa
gcggccggtccctggctcatagagcatgtgcgcggcaggccttgctcgctcatccgcgcg
cccgacgggatcactggccagcaattctttcagcgccacgccatggccggagcctcgaac
ctgctcgatcttgtgaccgtgtcgggcgatcgcgcgccctatctgcagatcgaccgtgtt
gagggattggcggcggtggcgcaaatcgctgggcttgagctgcatccgtggaactgcgcg
ccggggcgcccggagacgcccgggcggctgatattcgatctcgaccccggccccgacgtc
gccttcgagcaggtggcagccgccgctcttgagatgcgcgacaggctcgacgcgctgggg
ctcgtcagtttctgcaagacgacgggcggcaaggggctgcatgtcgtcacgccgctggcg
gtcgccaagggctccaaactcacctggcccgaggcgaaggggttcgctcaggaggtctgc
cggcgcatggccgcggacaattcgaacgcctatctcctcaacatgtccaaaaagcttcgc
gcggggcgtattttcctcgactacctgcgcaatgaccgcatgtcgacggccgtcgcgccg
ctgtcgccacgcgcgcgtccgggcgccacggtttcgatgccgctgaactggagcgaggcg
accaacagcctcgatccgaaagcctttacgatccgcacgtccgttgggcttctcgacaag
agcaaagcctgggccgactatgattcgggcgcgcgtccgctggaggcggcgatcaaacgc
ctcggccgcgccaaggcggccgcgtga
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